Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g03275 | ATGGCTATTACCATTACTTCACCAACAATCAGTAAGTGGTTTTGTAGAACAATTGAAGCTCTTTCTTTCAAGGTTTTAACTCTCATTGGTTGTTGTGCATTTGAGAAATTCATCAAAGTTATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTTGGAGGTTCAATAATAGGAACAATAGGAGGAGCTATAAAAGGCCAAACCACAGAAGCTGGTTTTCTTGATGGAGCTTGCAAAGGAGCAATTGGAGGAGCCATTGCAACCATAGAGTTTATGAGTTTAGCTTCTGATGGTGAGTCATTTTCCAAGGTTGCTTTGTTGACAAGTTTATTAAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGTGGCACAAGCCTATATAAATTCAGTAGAAGCAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACATATATTATGAAACTCCCATTTCATAAATTTAACTCTTCCGACAAAATTATGAAATTATACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAACGGAGAATCGGTGAGAATACTTCCAAAATGTTGTCACATTTATCATTTAGAATGCATTGACAAATGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTTCAATAG | 693 | 0.3608 | MAITITSPTISKWFCRTIEALSFKVLTLIGCCAFEKFIKVMERILFAVFTCVLALGGSIIGTIGGAIKGQTTEAGFLDGACKGAIGGAIATIEFMSLASDGESFSKVALLTSLLNGKVFMEWICPTVAQAYINSVEAAYGGVVSDIYDSMGVKGMSQTYIMKLPFHKFNSSDKIMKLYNESCCSICFQDFENGESVRILPKCCHIYHLECIDKWLVQQGSCPICRTYILQ | 230 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g03275 | 230 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 32 | 226 | IPR044523 | - | |
Vifa1g03275 | 230 | SMART | ring_2 | 183 | 224 | IPR001841 | - | |
Vifa1g03275 | 230 | Pfam | Ring finger domain | 183 | 225 | IPR001841 | - | |
Vifa1g03275 | 230 | SUPERFAMILY | RING/U-box | 176 | 228 | - | - | |
Vifa1g03275 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 183 | 225 | IPR001841 | - | |
Vifa1g03275 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 229 | IPR013083 | - | |
Vifa1g03275 | 230 | CDD | RING-H2_EL5-like | 182 | 225 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g03275 | Vifa-Chr1 | 509817457 | 509818606 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g03275 | 40 | 228 | C3H Transcription Factor Family | AT5G66070 | 36.275 | 2.59e-37 | 128 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g03275 | - | K19041 | mtr:11435458 | 311.612 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g03275 | 1 | 509817457 | 509818606 | Vifa1g03275 | 1 | 509817457 | 509818606 | ECH |