Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03275 ATGGCTATTACCATTACTTCACCAACAATCAGTAAGTGGTTTTGTAGAACAATTGAAGCTCTTTCTTTCAAGGTTTTAACTCTCATTGGTTGTTGTGCATTTGAGAAATTCATCAAAGTTATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTTGGAGGTTCAATAATAGGAACAATAGGAGGAGCTATAAAAGGCCAAACCACAGAAGCTGGTTTTCTTGATGGAGCTTGCAAAGGAGCAATTGGAGGAGCCATTGCAACCATAGAGTTTATGAGTTTAGCTTCTGATGGTGAGTCATTTTCCAAGGTTGCTTTGTTGACAAGTTTATTAAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGTGGCACAAGCCTATATAAATTCAGTAGAAGCAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACATATATTATGAAACTCCCATTTCATAAATTTAACTCTTCCGACAAAATTATGAAATTATACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAACGGAGAATCGGTGAGAATACTTCCAAAATGTTGTCACATTTATCATTTAGAATGCATTGACAAATGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTTCAATAG 693 0.3608 MAITITSPTISKWFCRTIEALSFKVLTLIGCCAFEKFIKVMERILFAVFTCVLALGGSIIGTIGGAIKGQTTEAGFLDGACKGAIGGAIATIEFMSLASDGESFSKVALLTSLLNGKVFMEWICPTVAQAYINSVEAAYGGVVSDIYDSMGVKGMSQTYIMKLPFHKFNSSDKIMKLYNESCCSICFQDFENGESVRILPKCCHIYHLECIDKWLVQQGSCPICRTYILQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03275 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 32 226 IPR044523 -
Vifa1g03275 230 SMART ring_2 183 224 IPR001841 -
Vifa1g03275 230 Pfam Ring finger domain 183 225 IPR001841 -
Vifa1g03275 230 SUPERFAMILY RING/U-box 176 228 - -
Vifa1g03275 230 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Vifa1g03275 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 229 IPR013083 -
Vifa1g03275 230 CDD RING-H2_EL5-like 182 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03275 Vifa-Chr1 509817457 509818606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03275 40 228 C3H Transcription Factor Family AT5G66070 36.275 2.59e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03275 - K19041 mtr:11435458 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03275 1 509817457 509818606 Vifa1g03275 1 509817457 509818606 ECH