Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03265 ATGATGAAGAGGAACAATATGAACACAAACTTGAAAGGCTATCATCAAACTTATTACAATAGTCCTATTATCAGCAACAAGAGTCCTTCTCATTGTAGTAATAATGGATCGTCTTCGGAGGATTACATGATGAATGGTTTTCATCCATGGCCACCGAGATCATACACGTGTAGCTTTTGTAGAAAAGAATTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGGCTTAGAGAATCATCACCACCAACAACTCATCATGAACTTCAAACTCAAACTCAAACTCAAGGTTCTTCTATGCTTAACCTTAATAATAACCCTACTAACCCTAATAACTTTTTCTCGAACTCATCGTTGTTGCAACAATCTTCATCTTCTTCTTCCTCTTTAGCAACAACTCTTAAGCCTATTACTTGCACGTTACCTTTGTTTGTTGTGGATGGTATTCTGTTGAACCCTAGTTTGAGTACAATGAGTTCGGAGAAATCGAAGATGGAAGAATGTGATGTTTTTGCATGTGAAGATGATCATGAGTGTAGAATGTTGAAGAAAGGTGAGAATATTATAAGGATGGATTTGGAGATAGGTTTGCCTGGTGATTATGATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTGCTTATTCTAATTAG 675 0.3704 MMKRNNMNTNLKGYHQTYYNSPIISNKSPSHCSNNGSSSEDYMMNGFHPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRESSPPTTHHELQTQTQTQGSSMLNLNNNPTNPNNFFSNSSLLQQSSSSSSSLATTLKPITCTLPLFVVDGILLNPSLSTMSSEKSKMEECDVFACEDDHECRMLKKGENIIRMDLEIGLPGDYDNLDLELRLGTTAYSN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03265 224 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Vifa1g03265 224 MobiDBLite consensus disorder prediction 91 127 - -
Vifa1g03265 224 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vifa1g03265 224 Gene3D Classic Zinc Finger 50 116 - -
Vifa1g03265 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vifa1g03265 224 SMART c2h2final6 55 77 IPR013087 -
Vifa1g03265 224 MobiDBLite consensus disorder prediction 71 127 - -
Vifa1g03265 224 MobiDBLite consensus disorder prediction 74 90 - -
Vifa1g03265 224 PANTHER OS07G0101800 PROTEIN 41 219 - -
Vifa1g03265 224 Pfam C2H2-type zinc finger 55 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03265 Vifa-Chr1 508821474 508822148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03265 34 218 C2H2 Transcription Factor Family AT3G23130 39.153 1.55e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g03265 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03265 - - gmx:100781722 164.466