Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03260 ATGACAACATCCACCTTCGCCCAATTCTACGCCTCCTGGTACGACCAATTCACCCGCTTAATCAACCAACTCACAACACCACCAAACCAAACCGACACACAGGAACAAATCCGCAAGGTCATGTCCCACCACGAAGACTACTTCAACGCTAAATCAACCGCTGCTGAAAAAGATCCTCTCCACGTCTTAGCATCTCCTTGGGCCACCACACTTGAACAATCCCTTCACTGGATCGCAGGGTGGAGACCCACCACAGCTTTTCACCTCATCTACACTGAATCATCTCTTCTCTTTGAGTCTCACATTATCGACATCCTTCGTGGACTAAGAACCGGTGACCTCGGTGATCTCTCACCGACTCAGTTCCGCCGTGTTAGCGACTTGCAATGTGACACCGTGAAGGAAGAGAATGCCATAACGGAGGAGTTATCAGAGTGGCAAGACAGTGCAACCGATATGATGGGTTCGGAGGCTGAAATCAATGATAAGATACAACGCCTGGTGGGCATTATAAAGAAAGCGGATGAGCTACGGCTGAGGACGCTGCGGAGTGTGGTGGAGTTTCTGTCGCCGCAGCAGGCTATTGAGTTCTTGATTGCTTCAGCTGAGTTGCTGGTTGGGATACGTGGTTGGGGATTGAATCACGACCGTTCACTTCCTAGGATATGA 669 0.5007 MTTSTFAQFYASWYDQFTRLINQLTTPPNQTDTQEQIRKVMSHHEDYFNAKSTAAEKDPLHVLASPWATTLEQSLHWIAGWRPTTAFHLIYTESSLLFESHIIDILRGLRTGDLGDLSPTQFRRVSDLQCDTVKEENAITEELSEWQDSATDMMGSEAEINDKIQRLVGIIKKADELRLRTLRSVVEFLSPQQAIEFLIASAELLVGIRGWGLNHDRSLPRI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03260 222 ProSiteProfiles DOG1 domain profile. 3 218 IPR025422 GO:0006351|GO:0043565
Vifa1g03260 222 Pfam Seed dormancy control 20 92 IPR025422 GO:0006351|GO:0043565
Vifa1g03260 222 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 5 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03260 Vifa-Chr1 508241636 508242410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03260 5 200 bZIP Transcription Factor Family AT5G06950 23.963 9.24e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03260 - - gmx:778192 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03260 1 508241636 508242410 Vifa1g03260 1 508241636 508242410 ECH