Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03255 ATGTCGCTGAAGAAGGTTTTTCGATCTGGCAAATTCTCGAGATCCTTTAAGGAGGTTCCACCTATCTGTGCTACCGGCGATGACCGGAATGGAACCGCCGTCGTCCGTGAAGCGGAGGACGGGACTGATTGGTCTACCATGCTGCCGGATCTACTTGCGGAGATTATTAAACGAGTTGACGCCGCCGAGGAACAGTGGCCGCGCCGTCAAAACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGGGATGTTACACGGGAGACCGTACGAGCACCGCGTGACGGAAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGCGACCTACCTCATCAGTGTCTTATTAAGCGGGATAAGAAGACCTCAACATTTTACCTTTATCTATCCCTTACATCATCATTCACAGATAAAGGGAAGTTTCTATTAGCAGCTAAAAGATATAGGTGTGGTACCCATATTGAGTATGTTATATCGCTCGATGCTGATGACTTATCTCAAGGGAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAAGCTAGCCGTCGTTTCGCAAGCAAACAGATAAGCCCTCATGTTCCTCATGTGCCTGCTGGTAACTTCGAGGTGGGGAACGTCTCCTACAAGTTCAACCTTTTAAAATCAAGAGGGCCAAGGAGAATGACTTGCTCTCTGAAGTCTACTGTCTCATCAATGGGTGAAAGTTCAGATGGCAAGTCTTTCGATGACCACAAGATGCACGATTGCTTTCTCAAATCTACTGTCTCTCCAATGGCTGAAAGCTCAGATGGCAAGTCTTCCAATGGCCACAAGATGCACCCTTGCTCTCTCAAATCTACTGTCCCATCAATGGGTAAAAGCTCAGATGCCAAGTCTTTTGCTGAGCACATGATGCCCCGTAAAAAACCTTCTGCCCACACAATCTTGAAAAACAAAGCTCCAAGGTGGCATGAACATTTGCAATGCTGGTGCTTGAACTTCCATGGTCGGGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTGTGGACCAGAGCCAACCTGAAGGAAAAGGAGATCAAGAAACTGTTCTCCTCCAGTTCGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAACCCTTATCAGCCTTCCATGCTTTTGCGATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1278 0.4742 MSLKKVFRSGKFSRSFKEVPPICATGDDRNGTAVVREAEDGTDWSTMLPDLLAEIIKRVDAAEEQWPRRQNVVACACVCKRWRDVTRETVRAPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSFTDKGKFLLAAKRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKASRRFASKQISPHVPHVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLKSTVSSMGESSDGKSFDDHKMHDCFLKSTVSPMAESSDGKSSNGHKMHPCSLKSTVPSMGKSSDAKSFAEHMMPRKKPSAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDQETVLLQFGKVGDDTFTMDYRQPLSAFHAFAICLTSFGTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03255 425 SUPERFAMILY F-box domain 38 88 IPR036047 GO:0005515
Vifa1g03255 425 Pfam Tub family 104 420 IPR000007 -
Vifa1g03255 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Vifa1g03255 425 SUPERFAMILY Tubby C-terminal domain-like 96 425 IPR025659 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Vifa1g03255 425 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Vifa1g03255 425 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Vifa1g03255 425 Gene3D Tubby Protein; Chain A 293 425 IPR025659 -
Vifa1g03255 425 Gene3D Tubby Protein; Chain A 99 292 IPR025659 -
Vifa1g03255 425 MobiDBLite consensus disorder prediction 283 315 - -
Vifa1g03255 425 Pfam F-box domain 49 87 IPR001810 GO:0005515
Vifa1g03255 425 Gene3D - 36 90 - -
Vifa1g03255 425 PANTHER TUBBY-RELATED 29 423 - -
Vifa1g03255 425 MobiDBLite consensus disorder prediction 283 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03255 Vifa-Chr1 507136027 507138800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03255 1 425 TUB Transcription Factor Family AT1G53320 61.268 2.54e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vifa1g03255 Tub 2.8e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03255 K19600 - gmx:100808096 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03255 1 507136027 507138800 Vifa1g03255 1 507136027 507138800 ECH