Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03251 ATGAGAAGACCTAAATCGAAGCAGTTTCGCAAACAACTACGACTCTCAGAAGAAGATGAAATTAAGCAATTGAATTCATGGATTCAGTTCCAGAAACCAGATTCCGGTTCGAACCCAATGTCTCTCCCACCTCTCCCCAAAAACTCCCCCGTCGGTCACCTCGGCGACAATACGTTCTCCCGCTACGCCGGCGTGGTGCGGTTTGAGCAGTTGCCACTGTCGAAGAAAACCAAAGACGCATTGAGGGGTTGCAAGTTCGTTTCCATGACTGATATTCAAAGAGCTTCTCTTCCTCATGCGCTATGTGGCCGTGATGTTCTCGGGGCCGCTAAAACTGGCTCCGGGAAAACACTTGCTTTCATTATCCCAGTGTTGGAGAAATTGTATAGAGAGAGATGGGGACCTGAAGACGGGGTTGGGAGCATAATAATATCACCTACAAGAGAATTAGCTGGTCAGATATTTGAGGTGTTGAATTCTGTTGGGAAGTACCATGGTTTTAGTGCTGGTCTCCTCATTGGTGGTCGTAAGGATGTTGACACTGAGAAAGAACGTTTGCAGGTTTTGGTACTAGATGAGGCTGATCGCATTCTTGACAGTGGATTCAAGAGGGCACTAAATGCAATCATCTCACAGTTACCAAAACGTAGGCAGACTATGCTTTTCTCAGCAACTCAAACGAAGTCAGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTACACGAAGAGTCTGTGGCTGCCACTCCTTCTCTCTTTGAAGCAAATTGTGATGATTGTTCCTCTTGA 804 0.4614 MRRPKSKQFRKQLRLSEEDEIKQLNSWIQFQKPDSGSNPMSLPPLPKNSPVGHLGDNTFSRYAGVVRFEQLPLSKKTKDALRGCKFVSMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFEVLNSVGKYHGFSAGLLIGGRKDVDTEKERLQVLVLDEADRILDSGFKRALNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVAATPSLFEANCDDCSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03251 267 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 190 198 IPR000629 -
Vifa1g03251 267 PANTHER RNA HELICASE 184 248 - -
Vifa1g03251 267 Pfam DEAD/DEAH box helicase 90 181 IPR011545 GO:0003676|GO:0005524
Vifa1g03251 267 CDD DEADc_DDX10 77 247 - -
Vifa1g03251 267 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Vifa1g03251 267 SMART ultradead3 85 261 IPR014001 -
Vifa1g03251 267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 244 IPR014001 -
Vifa1g03251 267 Gene3D - 56 181 IPR027417 -
Vifa1g03251 267 Gene3D - 182 254 IPR027417 -
Vifa1g03251 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 246 IPR027417 -
Vifa1g03251 267 Pfam DEAD/DEAH box helicase 184 233 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03251 Vifa-Chr1 506869573 506871960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03251 48 241 Eukaryotic Initiation Factors Gene Family AT1G72730 28.251 3.44e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03251 K14776 - gmx:100820055 431.409