Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03250 ATGACTCATCTACAGTTCAAAACAATTGTCTTTCTATCAAGTTGTAAACAGGTAAATTATAATCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTAGATTGTCCTGAGAATGTTGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGATGGAAAGTCAGTTTTGTTTCTATCGCCTTCAGAAACTCAAATGCTTGAAAAGTTAGAAGCAGCAAAGGTTCCAGTGCATTTAGTCAAGCCAAAGAAAGAAAAACTGCAACAGTGTCCAGCTTCTGAACCAGTGGATCCAAACCAGGAAAATGTCATAGAAGGTTCTAGAGAAAAGCTAGACACAATTGTTTTCAGAGACGAGGAAATTGAAAATGATCTTCTTCAACCAGTTGATACCTCAAATGAAGATGACACAGCTGATATTGGAGAATTAATACCAGCAACTCGTTTATTAAAGAAAAAGAAGCTCAAGATTAACGTGCATAGACCACTGGGGAGTCGGGTTGTATTCGATGACGAAGGCAACACACTTCCTCCTCTAGCCAGGATTGCTGGCACACAAAGTGACAAGGATTCATTGCTAATTGATCCAGTATCTCATCCTCATGCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGTCAGCGACTTAGAGAAAAAAGAATCAAGCAGAAAACGAAATGGAAGGCTGATAATATGGAAGAAGAGGACATCCAAGATGATATCTCTGGGTCAGAAGAAGACGAAACTGTAAATAAACGCCATAAAAAGAGTAAAATATACTTTGATAGCGACAGTGACGAGGGTGAAAGAAAAGAAGTCAAGCAGAATCAAGGTATTACTTTAGAGGAGCAAGAAGCGTTGGCTTTGAAGTTGTTGCAATCCATGCAAGCATAG 990 0.3949 MTHLQFKTIVFLSSCKQVNYNRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLSPSETQMLEKLEAAKVPVHLVKPKKEKLQQCPASEPVDPNQENVIEGSREKLDTIVFRDEEIENDLLQPVDTSNEDDTADIGELIPATRLLKKKKLKINVHRPLGSRVVFDDEGNTLPPLARIAGTQSDKDSLLIDPVSHPHAEQKAEYYKRMREDLKKADKEDKLVERQRLREKRIKQKTKWKADNMEEEDIQDDISGSEEDETVNKRHKKSKIYFDSDSDEGERKEVKQNQGITLEEQEALALKLLQSMQA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03250 329 SMART helicmild6 1 67 IPR001650 -
Vifa1g03250 329 Coils Coil 219 246 - -
Vifa1g03250 329 Pfam Helicase conserved C-terminal domain 21 66 IPR001650 -
Vifa1g03250 329 CDD SF2_C_DEAD 2 76 - -
Vifa1g03250 329 MobiDBLite consensus disorder prediction 277 310 - -
Vifa1g03250 329 Gene3D - 19 178 IPR027417 -
Vifa1g03250 329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 105 IPR001650 -
Vifa1g03250 329 PANTHER RNA HELICASE 22 239 - -
Vifa1g03250 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 100 IPR027417 -
Vifa1g03250 329 MobiDBLite consensus disorder prediction 253 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03250 Vifa-Chr1 506866695 506869540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03250 24 88 Eukaryotic Initiation Factors Gene Family AT3G19760 38.462 1.63e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03250 K14776 - gmx:100792106 288.115