Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03249 ATGACTCATCTACAGTTCAAAACAATTGTCTTTCTATCAAGTTGTAAACAGGTAAATTATAATCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTAGATTGTCCTGAGAATGTTGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGATGGAAAGTCAGTTTTGTTTCTATCGCCTTCAGAAACTCAAATGCTTGAAAAGTTAGAAGCAGCAAAGGTTCCAGTGCATTTAGTCAAGCCAAAGAAAGAAAAACTGCAACAGTGTCCAGCTTCTGAACCAGTGGATCCAAACCAGGAAAATGTCATAGAAGGTTCTAGAGAAAAGCTAGACACAATTGTTTTCAGAGACGAGGAAATTGAAAATGATCTTCTTCAACCAGTTGATACCTCAAATGAAGATGACACAGCTGATATTGGAGAATTAATACCAGCAACTCGTTTATTAAAGAAAAAGAAGCTCAAGATTAACGTGCATAGACCACTGGGGAGTCGGGTTGTATTCGATGACGAAGGCAACACACTTCCTCCTCTAGCCAGGATTGCTGGCACACAAAGTGACAAGGATTCATTGCTAATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGTCAGCGACTTAGAGAAAAAAGAATCAAGCAGAAAACGAAATGGAAGGCTGATAATATGGAAGAAGAGGACATCCAAGATGATATCTCTGGGTCAGAAGAAGACGAAACTGTAAATAAACGCCATAAAAAGAGTAAAATATACTTTGATAGCGACAGTGACGAGGGTGAAAGAAAAGAAGTCAAGCAGAATCAAGGTATTACTTTAGAGGAGCAAGAAGCGTTGGCTTTGAAGTTGTTGCAATCCATGCAAGCATAG 972 0.394 MTHLQFKTIVFLSSCKQVNYNRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLSPSETQMLEKLEAAKVPVHLVKPKKEKLQQCPASEPVDPNQENVIEGSREKLDTIVFRDEEIENDLLQPVDTSNEDDTADIGELIPATRLLKKKKLKINVHRPLGSRVVFDDEGNTLPPLARIAGTQSDKDSLLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLREKRIKQKTKWKADNMEEEDIQDDISGSEEDETVNKRHKKSKIYFDSDSDEGERKEVKQNQGITLEEQEALALKLLQSMQA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03249 323 SMART helicmild6 1 67 IPR001650 -
Vifa1g03249 323 MobiDBLite consensus disorder prediction 271 304 - -
Vifa1g03249 323 CDD SF2_C_DEAD 2 76 - -
Vifa1g03249 323 Coils Coil 220 240 - -
Vifa1g03249 323 Pfam Helicase conserved C-terminal domain 21 66 IPR001650 -
Vifa1g03249 323 Gene3D - 19 178 IPR027417 -
Vifa1g03249 323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 105 IPR001650 -
Vifa1g03249 323 PANTHER RNA HELICASE 19 238 - -
Vifa1g03249 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 100 IPR027417 -
Vifa1g03249 323 MobiDBLite consensus disorder prediction 247 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03249 Vifa-Chr1 506866695 506869540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03249 21 88 Eukaryotic Initiation Factors Gene Family AT5G11170 31.884 1.74e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03249 K14776 - gmx:100792106 294.664