Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g03245 | ATGGATCATGCTAGAGGTTCACCCAGAAGAATTAGAAGAAATCGCCAATCTCCTTATACTTTGGCCAGATCTTCTGCTTCTTCCTCTAATGGAGTTGCTACTAGGGATAATGCATCACTTCCCTTTCAGCCATTGTTTAATATTCAAGCTCCTAATACAAATGAAAGTTTATTAGAGAGTGCAAATATGGGTTTTCAGAGATCCTATAATGAAACAATTGGCATAAGATTTTCTCATCGTTCTCCTCTCTTCCGTCATCAACGCCGTCGTTATGATCTCCCAACAATTCCTATGCATGGAGTTCCACCAAATCCTCCTCCACATGGTGCTGTAGTCCCTCCACAGGATATTGCTATTTTAAATGAAGAAGTGGAAAATCCGGTTGATCCTTATAGAGGAATGCGTTTGAACATTGAAGACATGTCTTATGAGGAACTTCTTGCACTGGGCGAGAGTATTGGTAGTGTTAACACTAGTCTATCAGAGGAAACAATAACTGCTCTACTGAAGACAAAATCATACAGAATTAGTATTAACTTGGAGGAGTTACCACCTGACGATCAAGAATCTGATACTTGCATTATATGCCAGGAGCATTTTGAAATTCAAGAAAATATTGGAGTGCTTGCATGTGAGCATGTATTTCATGTTGGGTGCATAACACAATGGTTGTTGATAAAAAATAAGTGTCCAATTTGCAAATCTGAAGCTTTGTCTCCTACAAATGTTGAATAG | 735 | 0.3864 | MDHARGSPRRIRRNRQSPYTLARSSASSSNGVATRDNASLPFQPLFNIQAPNTNESLLESANMGFQRSYNETIGIRFSHRSPLFRHQRRRYDLPTIPMHGVPPNPPPHGAVVPPQDIAILNEEVENPVDPYRGMRLNIEDMSYEELLALGESIGSVNTSLSEETITALLKTKSYRISINLEELPPDDQESDTCIICQEHFEIQENIGVLACEHVFHVGCITQWLLIKNKCPICKSEALSPTNVE | 244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g03245 | 244 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Vifa1g03245 | 244 | Pfam | Ring finger domain | 191 | 234 | IPR001841 | - | |
| Vifa1g03245 | 244 | SMART | ring_2 | 193 | 233 | IPR001841 | - | |
| Vifa1g03245 | 244 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 9 | 239 | IPR045191 | GO:0061630 | |
| Vifa1g03245 | 244 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 238 | IPR013083 | - | |
| Vifa1g03245 | 244 | ProSiteProfiles | Zinc finger RING-type profile. | 193 | 234 | IPR001841 | - | |
| Vifa1g03245 | 244 | SUPERFAMILY | RING/U-box | 186 | 240 | - | - | |
| Vifa1g03245 | 244 | MobiDBLite | consensus disorder prediction | 13 | 36 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g03245 | Vifa-Chr1 | 506581878 | 506589549 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g03245 | 129 | 238 | C3H Transcription Factor Family | AT2G15530 | 50.877 | 1.25e-29 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g03245 | K19041 | - | tcc:18594097 | 165.622 |