Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03218 ATGACTAGTGTTCTTCTTTTTGCTCTCCTCTTACTCATCCCAGTTATCTTTCTGCTTAGAAGAACCAAATCATCCAAAAGGGTCCCTCCAGGTTCACTTGGAATTCCCATTATTGGTCAAAGCCTTGGCCTTCTTCATGCTATGCGATCCAACACTGCAGAAAAATGGGTTCAAGACAGAATCAACAAGTATGGTCCTATTTCAAAGCTAAGTCTGTTTGGAACACCAACGGTTTTGATTCATGGACAGGCTGCAAATAAGTTTATATTCACAAATGGCGGTGATACTATTGTTAACCAGCAAACACAATCTATTAAGAAGATATTGGGTGACAGGAACTTAATGGAACTGAGTGGCAAAGATCATAGCAGAGTCAGAGGTGCACTTGTCTCATTCTTGAAACCAGAATCTTTGAAGCAATATGTTGGTAAAATTGATGAAGAAGTTAAGCAGCACATTCAGATGCATTGGGAAGGGAAGCAGCAGCTCAAGGTATTACCTCTGATGAAGACTCTCACATTCAATATAATTTGCTCTCTTCTGTTTGGCCTTGAGGGTGGAAAACAAAGAGATCAATTCATGAAACCCTTTCAAGCAATGATTCAAGGAATGTGGTCGATACCAGTTAATGCACCTTTCACACGCTACAACCGCAGCCTAAAGGCAAGTGCGAGGATCCAAAACCTGTTGAAGGAGATTGTGCACCAGAAGAAAGATGAACACGAGAAAAACGGTGCCAATTCCCGCCAAGACTTAATCAGCTGCTTGCTTAGCATGGTTGAAGATGGAAAACAAGTTTTAACTGAGAAGGAAATCATCCATAATGCTATGCTTGTCATGGTTGCAGGACATGATACATCATCTATTGTAATCACTTTCGTTATCCGGCTTTTGGCTAATGAACCAACTATTTATGCAGCTGTTCTTCAAGAACAGAAGGAAATAGCAAAAGGCAAGCTTTTGGGAGAGCCTCTGACATGGGAAGACCTTTCAAAGATGAAGTACACTTGGAGAGTAGTAATGGAAACTCTGAGAAGGTTTCCACCCGTCTTCGGTGGGTTCAGAAAAACAGCAACAGATATTGAATATGGTGGATACATTATACCCAAAGGGTGGCAGATCTTTTGGGTTACATCGACGACTCACATGGACAGCAACATTTTCCCCGAACCATTAAAGTTTGACCCGAGTAGATTTGAAAACCAAGCATCTACACCACCCTATTGCTTTGTTCCATTTGGAGGGGGAGCAAGAATATGTCCAGGATACGAGTTTGCCAGGGTTGAAACTCTAGTGGCAATTCATTACCTTGTGACCAAGTTCAGTTGGAAGCTGCTTTCAGACAATTCCTTCAGCAGGGATCCAATGCCAACACCATCTCAAGGTCTACTGATTGAACTTTGCCCAAGGGAAATATCATAG 1422 0.4191 MTSVLLFALLLLIPVIFLLRRTKSSKRVPPGSLGIPIIGQSLGLLHAMRSNTAEKWVQDRINKYGPISKLSLFGTPTVLIHGQAANKFIFTNGGDTIVNQQTQSIKKILGDRNLMELSGKDHSRVRGALVSFLKPESLKQYVGKIDEEVKQHIQMHWEGKQQLKVLPLMKTLTFNIICSLLFGLEGGKQRDQFMKPFQAMIQGMWSIPVNAPFTRYNRSLKASARIQNLLKEIVHQKKDEHEKNGANSRQDLISCLLSMVEDGKQVLTEKEIIHNAMLVMVAGHDTSSIVITFVIRLLANEPTIYAAVLQEQKEIAKGKLLGEPLTWEDLSKMKYTWRVVMETLRRFPPVFGGFRKTATDIEYGGYIIPKGWQIFWVTSTTHMDSNIFPEPLKFDPSRFENQASTPPYCFVPFGGGARICPGYEFARVETLVAIHYLVTKFSWKLLSDNSFSRDPMPTPSQGLLIELCPREIS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03218 473 PRINTS E-class P450 group I signature 291 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 377 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 410 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 271 288 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS E-class P450 group I signature 420 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 FunFam Taxadiene 5-alpha hydroxylase 19 470 - -
Vifa1g03218 473 PRINTS P450 superfamily signature 420 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS P450 superfamily signature 282 299 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PRINTS P450 superfamily signature 411 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 Gene3D Cytochrome P450 19 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 Pfam Cytochrome P450 29 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 PANTHER CYTOCHROME P450 26 26 457 - -
Vifa1g03218 473 SUPERFAMILY Cytochrome P450 21 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03218 473 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 413 422 IPR017972 GO:0005506|GO:0016705
Vifa1g03218 473 CDD CYP90-like 60 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03218 Vifa-Chr1 503434558 503436261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03218 1 450 Cytochrome P450 AT5G45340 33.407 7.29e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03218 - - gmx:100790001 775.007