Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03216 ATGGCTTCTTCCAGCAACGTCCGTGAAAACTTCGTATTTATTGCCAAGCTAGCAGAACAAGCTGAACGCTATGATGAAATGGTGGAAGCAATGAAGAAACTGGCGAAGATGGACGTTGAATTGAGTGTGGAAGAGAGAAACTTGTTTTCTGTTGGGTACAAGAATGTGGTGGGGTCAAGGAGAGGTTCATGGAGGATCCTATCATCAATTGAGCAGAAAGAGGAATCAAAAGGGAATGAGTTGAACGTTAAGCGGATTAAGGATTATCGACAGAAGGTGGAGGTGGAGCTTTCCAACATTTGCAATGATATTATGATTATTTTGGATGAGCATCTTATTCCTTCCACTAACATTGCTGAGTCCACAGTGTTTTATTATAAGATGAAAGGAGATTATCATCGCTATTTAGCTGAATTCAAATCTGGTGATGAAAAGAAAGAGGTAGCAAATCAGTCACTTAAAGCATATCAGAGTGCTTCTGCGACTGCCGAGAATGAATTACAACCTACGCATCCTATCCGATTGGGTCTGGCTCTAAATTTCTCAGTGTTTTATTATGAGATAATGAATTCACCAGAAAGGGCCTGCCACCTTGCAAAACAAGCATTTGACGATGGTGTCTCGGAGTTGGATTCGCTAAATGAAGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGCGCGACAACCTTACCTTATGGACTTCTGATATCCCAGAAGATAGTGAGGACCAGAAAATGGAAAGTGCGACTAAGAGTGGTCAAGAAGAAGAAGAAGTGGGCCGCTAA 792 0.4167 MASSSNVRENFVFIAKLAEQAERYDEMVEAMKKLAKMDVELSVEERNLFSVGYKNVVGSRRGSWRILSSIEQKEESKGNELNVKRIKDYRQKVEVELSNICNDIMIILDEHLIPSTNIAESTVFYYKMKGDYHRYLAEFKSGDEKKEVANQSLKAYQSASATAENELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDGVSELDSLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDSEDQKMESATKSGQEEEEVGR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03216 263 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Vifa1g03216 263 FunFam 14-3-3 protein epsilon 4 249 - -
Vifa1g03216 263 Coils Coil 14 37 - -
Vifa1g03216 263 SMART 1433_4 8 249 IPR023410 -
Vifa1g03216 263 Pfam 14-3-3 protein 15 236 IPR023410 -
Vifa1g03216 263 MobiDBLite consensus disorder prediction 240 263 - -
Vifa1g03216 263 Gene3D - 1 251 IPR036815 -
Vifa1g03216 263 SUPERFAMILY 14-3-3 protein 8 238 IPR036815 -
Vifa1g03216 263 PANTHER 14-3-3 PROTEIN 8 239 IPR000308 -
Vifa1g03216 263 MobiDBLite consensus disorder prediction 238 263 - -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Vifa1g03216 263 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Vifa1g03216 263 Coils Coil 146 166 - -
Vifa1g03216 263 PIRSF 14-3-3 2 249 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03216 Vifa-Chr1 502956838 502958354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03216 2 242 14-3-3 family AT1G26480 74.274 6.80e-139 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03216 K06630 - gmx:100806167 454.907