Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03214 ATGAGTTTCTTTGCATGTTGTAAATCACAAGATAAGAATGACAAGATCTCATTGAAGAAGGGTGTTAACATCTGTTTTAAATATGATAGTGGCAAAAGGAAGTATATAGTGGAAGAAATCAATAGGGATGAAAAAGGAAATATTACCTCTAAGATATTTTCTTACAATGAGCTATGTGTTGCAACTAAGAATTTTCATACCAGCAATATGGTTGGTGAAGGAGGTTTTGGGAGAGTTTACAAAGGACGCATCAAAAGCATAGACAATAAGGTCGTTGCAGTAAAGAAACTTAATAAGGATGGATTTCAAGGAAGTAGAGAGTTTCTTGCAGAGGTTATGATTTTGAGTTTCTTGCACCACTCCAACCTTGTCAATTTGGTAGGGTATTGTTCTGAAGGTGATCAAAAGATTTTGGTATATGAGTACATGGCAAATGGTTCTTTAGAAGATCACCTTTTTGAGTTACCGCAAACCAAAAAGCCTTTGGATTGGTATACTAGAATGAAAATTGCGGAAGGTGCGGCGAAAGGACTCGAATACTTACACGCGGAGGCAAATCCGCCCGTGATATACCGCGATTTCAAAGCATCGAACATACTATTAGACGAAAACTTCAATCCAAAACTCTCCGATTTTGGCCTTGCAAAACTTGGTCCTACCGGTGACAAAACACATGTGTCCACTAGGGTTATGGGAACTTATGGCTATTGTGCCCCTGAATATGCATCAACAGGTCAATTGACTACAAGATCAGATGTTTACAGCTTTGGAGTTGTGTTTCTTGAGATGATCACAGGGAGAAGAGTACTTGATTATTCAAGATCGTCAGAAGAACAAAACTTAGTCAATTGGGCGCTACCACTACTCAAAAACAAAAGAAAATATGCATCAATGGTTGATCCATTGCTAAAAGGGAACTATCCAACAAGGGGTCTATTACAAGCACTAGCAATTGCAGCAATGTGTCTATTGGAGGATGCAAATGCAAGACCTTTGATTGGTGATGTAGTAACAGCCCTTGGAGTTTTAGCAATGAGACATGTACAAGTTGGTAAACAAAAAAATACAAAAGAAACCAGTAGTGAGCAAGGAGAAGGAAGTTGGGAAATGAGTTTCATAGAGTAG 1125 0.384 MSFFACCKSQDKNDKISLKKGVNICFKYDSGKRKYIVEEINRDEKGNITSKIFSYNELCVATKNFHTSNMVGEGGFGRVYKGRIKSIDNKVVAVKKLNKDGFQGSREFLAEVMILSFLHHSNLVNLVGYCSEGDQKILVYEYMANGSLEDHLFELPQTKKPLDWYTRMKIAEGAAKGLEYLHAEANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTRSDVYSFGVVFLEMITGRRVLDYSRSSEEQNLVNWALPLLKNKRKYASMVDPLLKGNYPTRGLLQALAIAAMCLLEDANARPLIGDVVTALGVLAMRHVQVGKQKNTKETSSEQGEGSWEMSFIE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03214 374 CDD STKc_IRAK 71 340 - -
Vifa1g03214 374 PANTHER OS07G0668900 PROTEIN 6 352 - -
Vifa1g03214 374 FunFam Serine/threonine-protein kinase CDL1-like 36 142 - -
Vifa1g03214 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vifa1g03214 374 ProSiteProfiles Protein kinase domain profile. 65 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03214 374 ProSitePatterns Protein kinases ATP-binding region signature. 71 96 IPR017441 GO:0005524
Vifa1g03214 374 SUPERFAMILY Protein kinase-like (PK-like) 47 340 IPR011009 -
Vifa1g03214 374 MobiDBLite consensus disorder prediction 352 374 - -
Vifa1g03214 374 Pfam Protein kinase domain 65 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03214 374 Gene3D Phosphorylase Kinase; domain 1 36 142 - -
Vifa1g03214 374 Gene3D Transferase(Phosphotransferase) domain 1 143 366 - -
Vifa1g03214 374 FunFam Serine/threonine-protein kinase PBS1 143 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03214 Vifa-Chr1 502848466 502850230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03214 41 343 Glycoside Hydrolase AT3G07070 62.706 2.39e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa1g03214 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03214 - - gmx:100798032 576.63