Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03205 ATGGCAAAAATGTTTGATACCAAAGCTCTTGTACCTGCAATAACCTCAATTGTGCTAATGCGGACTATCACTAATGAACTCGTTCCTCATGAGCTTCTACATTTTTTTCAATCAGGAATTCATCATCTTTTTCGTCAATTTTCGGCGGAATTCACGATAGTGATTGAAGAATTTCAAGGGATGGCAAGAAACCAAGTTTTTGAGGCTGCAGAAATCTACCTAGGAACTAAAGCAGCAACTGTCTCAGCAGAGAGAGTTAAGGTAAGCAAATCTGAGGATCATAAAAAGCTTTCATTCAATATTGATAGAAATGAAGAAGTGAACGATCTTTTTGAAGGTGTTAGTGTAAAGTGGAAACTAATTTGCATATCAGTGGACTCATCCAGAATTCGACATTACGATCGTGACTCCTCGTCCGTGGCAGAAATAAGATCATACGAGTTAACTTTTCACAAGAAACACAAGAGCAAGATCTTTGATTCATATTTGCCTTATGTGATGGAAGTAGCTAGGAAAGTTAAACAAGGAAGCATAGCCCTTAAGATTCACTCAAATGACTATAGTCGCTGGTCTCATGAACCTGTTAAGTTCAACCATCCAATGAGTTTCAACACTCTTGCGATTGATGAAAAGCTTCAAAGCGAAATTGTGAATGACTTGGACAAATTTGTGAAGGCTAGAGAGTTTTATAGAAGAACTGGGAAAGCTTGGAAACGCGGTTACTTGTTGTATGGTCCTCCTGGTACTGGCAAGTCTAGCTTGATTGCAGCCATGGCTAACTATCTCCACTATGATATCTATGACTTGGATCTCACTGTTGTAGGGGATAATAAGAGCTTGAGGCACCTTCTTCTTAGCATGTCCAACCATGAAGAACCAGTTGATAATGGAACCAATAAGATGACACTATCAGGACTACTGAATGCAGTAGATGGTCTTTGGTCGTGTTGTGGAGAGGAACATATAATTGTTTTCACGACGAATCACAAAGAAAGACTTGATCCTGCTCTGCTAAGACCTGGTAGAATGGACAAGCAAATTCACCTGTCATATTGCAACTTTTCTGCTTTTAAGCAATTGGCAATGAACTATCTTTGTGTTAATGAACATGAACTATTTGAAAAGATTGAACAACTTTTAGGACAAGTGAAAGTTACTCCAGCTGAAATAGCAGAAGAGCTAACAAAAGATGTTGAGGCTACAGAATGCCTACAAGACCTTATCAATTTCCTCCATACCAAGAAAATGGTCAAAAAAGAGATTAAGAGTGAAGGAAATAGCAATGAAGACGAACATGAACTAGGTAGAGAAAATATGTAG 1320 0.3841 MAKMFDTKALVPAITSIVLMRTITNELVPHELLHFFQSGIHHLFRQFSAEFTIVIEEFQGMARNQVFEAAEIYLGTKAATVSAERVKVSKSEDHKKLSFNIDRNEEVNDLFEGVSVKWKLICISVDSSRIRHYDRDSSSVAEIRSYELTFHKKHKSKIFDSYLPYVMEVARKVKQGSIALKIHSNDYSRWSHEPVKFNHPMSFNTLAIDEKLQSEIVNDLDKFVKAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLHYDIYDLDLTVVGDNKSLRHLLLSMSNHEEPVDNGTNKMTLSGLLNAVDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSAFKQLAMNYLCVNEHELFEKIEQLLGQVKVTPAEIAEELTKDVEATECLQDLINFLHTKKMVKKEIKSEGNSNEDEHELGRENM 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03205 439 Gene3D - 191 347 IPR027417 -
Vifa1g03205 439 PANTHER BCS1 AAA-TYPE ATPASE 14 418 - -
Vifa1g03205 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 394 IPR027417 -
Vifa1g03205 439 Gene3D - 348 418 - -
Vifa1g03205 439 Pfam ATPase family associated with various cellular activities (AAA) 242 272 IPR003959 GO:0005524|GO:0016887
Vifa1g03205 439 Pfam ATPase family associated with various cellular activities (AAA) 292 350 IPR003959 GO:0005524|GO:0016887
Vifa1g03205 439 Pfam Domain associated at C-terminal with AAA 28 121 IPR025753 -
Vifa1g03205 439 SMART AAA_5 237 353 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03205 Vifa-Chr1 501834916 501836372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03205 213 353 Calmodulin-binding Proteins AT3G56690 26.036 7.17e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03205 K08900 - gmx:100778503 535.413