Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03194 ATGGAGTTTAATGTACTCTTTTTTATACTTCTCTTTTGTTCTACTTTCATCTCACACTTGACTTCAGCTGTTACACTAAAGCTCAACCCTCAAGAAGTGAAGGCATTGAAGGAGATAGGTAACAAGATTGGGAAGAAAGATTGGGATTTTGGAGTAGATCCTTGTAGTGGAAAAGGGAATTGGAATGTTTCTGAATCTGATAATTGGAAAGGTTTTGAGAGTTCTGTGATTTGTGATTGTTCTTTCAAAAACAATACTTCTTGCCATGTTGTAAGCATGTCCATGAAGGAACAAAATCTTTCTGGTATTCTCTCATCAGAATTTTCCAAGCTTCGTCATCTTAAAATATTAGACCTTAGTCGTAACATCATCACCGGTTCTATACCTCAACAATGGACTACAATGAACTTGGAGGAGTTATCTTTAATGGGAAACAGATTATCAGGACCATTCCCTAAAGTTCTAACCAATATTACAACCCTACAAAATATGAGTATCGAAGGAAATCTATTTTCTGGCTTTATTCCAACCGAGATTGGGAAGTTGATCAACTTAGAAAAACTCATTCTTCAATCAAATGGATTCACGGGAGCGTTACCGTCCGCGCTTTCCAAGTTGACGAAATTGAATGATTTGAGGCTAAGTGACAATAACTTCTTTGGGAAGATACCTGATTTCATTAGTAAATGGACAGTGATTGAAAAGCTGCACATCCAAGGTTGCTCTCTTGAGGGGCCTATACCTTCCAGCATTTCTGCATTGACAAAATTGAGTGATTTGAGGATAACTGACTTAAGAGGTAGTAAAAGCTCTACTTTTCCACCACTAAATAATATGAAATCCATGAAGACACTAGTTTTGAGAAGATGCATGATTAAAGGAGAGATACCGGAATATATCGGGGTAATGGAAAAACTGAAAATCTTAGATTTAAGTTTTAATAGCTTGAGTGGAAAGATACCCGACTCTTTTGACGAGCTTGACAAAGTCGACTTCATGTATCTTACTTCGAACAACTTATCAGGAACTATACCGAGATGGGTCCTTTCAAATAACAAAAATATTGATATCTCTAACAATAACTTTGAATGGGAAAACTCAAGTCCAACCGAATGTCCACGAGGGAGCATAAACCTTGTCGAGAGCTACTCTTTATCATCATCAAAGAAAAGTAACATTCATTCATGCTTTAAACGGAACTTCCCATGCTCGTCGGATAACCCTCGTCATTACTCCATGCGCATTAACTGCGGTGGTAGTGAAGCAAATGTTAGTGGTAGTATTTATGAGGCAGACACGGAACTAAAAGGCGCTTCAGTGTTATTTATCACTAACGATTGGGCTCTTAGCAGCACAGGGAGCTTCATGGACAATGATATTGATTCTGATCCTTACACTGTGACCAATACTTCCAAACTTCTTAATGTCTCTATGATCAACTCGAAACTCTACACAACAGCTCGCGTTTCGCCTCTTTCTCTCACATACTATGGCCTATGCATGATAAATGGAAACTACACTGTCAAACTTCACTTTGCAGAGATTATTTTCATCAACGATATGTCATTTAACCGTCTCGGGAAGCGGATATTCGACGTCTACATCCAGGACAAATTGGTGTTGAGAGACTTTGATATCGAACGAGAAGCTGGTGGTACCGAAAAGCCGATTGTGAAGAAATTTAATGCAACTGTCACGCAGAATACTTTGAGGATTCAATTCTATTGGGCTGGAAAAGGAACCACCGGAATACCAACAAGAGGAGTTTATGGACCTTTAGTTTCTGCTATAACTGTGGATCCTAATTTTAAACCTCCGTCGGAGCACGGCAACAGAACTTATGTCATACTACTAACAGTTGGCATAGTCTGTGGCGTGTTAGTCGTTGTCCTTATTATGCTAGCTATCATGAGGAGGAAGGGAATGTTAGGAGGCAAGGATCCAGTTTATAAAGAGCTTCAAGGTATAGAACTGCAAACAGGATTGTTCACTTTAAAACAAATAAAAACAGCTACCGAAAACTTCGATGCAGAAAATAAACTCGGTGAAGGTGGCTTTGGTTCTGTTTACAAGGGGCTACTATCAGATGGTACAGTAATTGCGGTAAAGCAGTTATCATCAAAATCTAAGCAAGGAAACCGCGAGTTTGTGAATGAGATAGGAATGTTATCTGGACTTCAGCATCCGAATCTTGTTAAGCTCCATGGATGTTGCGTCGAAGGGAACCAACTGATATTGATATATGAGTACATGGAAAATAATTGTCTATCTCGCATTCTTTTCGGGAAGGGATCAGACAAGAAAAAGAAACTGGATTGGCTTACCAGAAAGAAAATTTGCCTTGGTATAGCTAAAGCTTTGGCTTATCTCCATGAAGAGTCCAGAATTAAAATCATACATAGGGATATAAAGGCAAGTAATGTGTTGCTGGACAAGGATTTCAATGCCAAAATTTCAGATTTCGGTTTGGCAAAACTTATCGAAGATGACAAAACACATGTCAGCACCCGGATTGCAGGAACAATCGGTTATATGGCTCCAGAATATGCAATGCGTGGCTACTTAACTGACAAAGCAGATGTTTATAGCTTTGGCGTGGTTGCATTGGAAACTATCAGCGGAAAGAGCAATACAAATTATAGGCCGGACGATGAATTTTTCTACCTTTTAGATTGGGCCTATGTTTTACAAGAAAGGGGAAGTCTTTTGGAGCTAGTTGATCCAGATATAGGTTCAGATTATTCAACCGACGAAGCCATTGTAATGCTAAATGTAGCTCTCTTGTGTACTAATGCATCTCCTACACTTAGGCCAACAATGAGCCAAGTTGTAAGCATGCTTGAAGGTTGGACCGACATTCAGGATCTTCTTTCGGATCCGGGATATTCAGCAGCTGGTTCAAGTTCAAAACATAAAAGCATAAGAAGTCACTTCTGGGAGAATCCAAGTAGATCACAAAGCATGTCAATACCTACTATTTATACTGATTCCTCTTACTCACACGTTGAAACAGAAGAGAGCAATCATCTCGTAAAAAATAACTCAGTTGGATCAGACAAATAA 3063 0.3908 MEFNVLFFILLFCSTFISHLTSAVTLKLNPQEVKALKEIGNKIGKKDWDFGVDPCSGKGNWNVSESDNWKGFESSVICDCSFKNNTSCHVVSMSMKEQNLSGILSSEFSKLRHLKILDLSRNIITGSIPQQWTTMNLEELSLMGNRLSGPFPKVLTNITTLQNMSIEGNLFSGFIPTEIGKLINLEKLILQSNGFTGALPSALSKLTKLNDLRLSDNNFFGKIPDFISKWTVIEKLHIQGCSLEGPIPSSISALTKLSDLRITDLRGSKSSTFPPLNNMKSMKTLVLRRCMIKGEIPEYIGVMEKLKILDLSFNSLSGKIPDSFDELDKVDFMYLTSNNLSGTIPRWVLSNNKNIDISNNNFEWENSSPTECPRGSINLVESYSLSSSKKSNIHSCFKRNFPCSSDNPRHYSMRINCGGSEANVSGSIYEADTELKGASVLFITNDWALSSTGSFMDNDIDSDPYTVTNTSKLLNVSMINSKLYTTARVSPLSLTYYGLCMINGNYTVKLHFAEIIFINDMSFNRLGKRIFDVYIQDKLVLRDFDIEREAGGTEKPIVKKFNATVTQNTLRIQFYWAGKGTTGIPTRGVYGPLVSAITVDPNFKPPSEHGNRTYVILLTVGIVCGVLVVVLIMLAIMRRKGMLGGKDPVYKELQGIELQTGLFTLKQIKTATENFDAENKLGEGGFGSVYKGLLSDGTVIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLHGCCVEGNQLILIYEYMENNCLSRILFGKGSDKKKKLDWLTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKISDFGLAKLIEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETISGKSNTNYRPDDEFFYLLDWAYVLQERGSLLELVDPDIGSDYSTDEAIVMLNVALLCTNASPTLRPTMSQVVSMLEGWTDIQDLLSDPGYSAAGSSSKHKSIRSHFWENPSRSQSMSIPTIYTDSSYSHVETEESNHLVKNNSVGSDK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03194 1020 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524
Vifa1g03194 1020 Pfam Protein tyrosine and serine/threonine kinase 677 947 IPR001245 GO:0004672|GO:0006468
Vifa1g03194 1020 CDD STKc_IRAK 681 949 - -
Vifa1g03194 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 230 378 - -
Vifa1g03194 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 987 - -
Vifa1g03194 1020 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 199 - -
Vifa1g03194 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 750 - -
Vifa1g03194 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 410 602 - -
Vifa1g03194 1020 Pfam Malectin domain 412 597 IPR021720 -
Vifa1g03194 1020 Gene3D - 409 601 - -
Vifa1g03194 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Vifa1g03194 1020 Pfam Leucine rich repeat 282 340 IPR001611 GO:0005515
Vifa1g03194 1020 SUPERFAMILY Protein kinase-like (PK-like) 659 974 IPR011009 -
Vifa1g03194 1020 Gene3D Ribonuclease Inhibitor 265 371 IPR032675 -
Vifa1g03194 1020 MobiDBLite consensus disorder prediction 998 1020 - -
Vifa1g03194 1020 SUPERFAMILY L domain-like 76 370 - -
Vifa1g03194 1020 SMART serkin_6 675 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03194 1020 Gene3D Phosphorylase Kinase; domain 1 646 750 - -
Vifa1g03194 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 751 959 - -
Vifa1g03194 1020 ProSiteProfiles Protein kinase domain profile. 675 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03194 1020 Gene3D Ribonuclease Inhibitor 29 264 IPR032675 -
Vifa1g03194 1020 Gene3D Transferase(Phosphotransferase) domain 1 751 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03194 Vifa-Chr1 499883110 499889395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03194 212 1011 Receptor kinase-like Gene Family AT1G07650 62.701 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03194 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03194 - - gmx:100784864 1598.56