Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03191 ATGATCTTCCTAAACTCACTGTGTGCAATGATGGACCGGCCTTCTCCCATGAATTCAAATTGGCCTGAAGTTTATGGCTACGGCGTCGCCGAACTCAAAACCCTAGGTAACGAACTACTCTCATCAGCCTCTAACATCAACAACCTCCCCCTTCTTCTCACCTTCGTCTCACCTTCTTCTCCACCTCAACACGTCCTCGAATCGCTTCTCTCTCTTCATTCTTTCTTCCTCCCTCTCCTCCCTCAACTACCTTCCTCCTCTGCCACTGCCAACACCTCCTCCTCCGACAACGCCGTTGCCGACCAGTCTGAGTTCATTTACCTCACTTGGCTCCGTTCGAAGTTCGATGAGTTTCTTAAATCTCTGATAGATGTTCTTGTATCGGATCAATCTGATGAAACTCTGAAGGAAGTTGTGTTGGATACGTTGATGGAGTTTGTGAAGGTTGCTAATGGCGGCACCTTTCATTCTTCGTTGTATAACAGAATTATCAGTAGTATTATTCACTCTGCTAGTTCTGCTGAATTTTTGATTGATTTACTAACATCAAAGTATTTCAAGTATATTGATGTCAGTTATTTTACATTCATAAGTCTAGAAAAGCTAGCTAGAAATTTGCAGGGGAAAGATGTTTCAGATGATAAAACTGCAAGTGTAGATGGCAATGATGAAAGTCAATTGAGCTCAAAGTTAGTAAAATCTATAGACACTGGAAATCTCAAACGACACTCAAACAGAAGGAGGAAACACCGAAAAGAAAGAACAACCAAATCTCATTCTCCGTCGAACTCAACCCTTTGTCATCTCACCTACGTCGTCGTCATCCCTCACTTCATTTGTATCCGTTGTGGCTGCAGCAAGGGTTCTCTGACTGGACTTGCTCCACTTGAAGCAGTGCTCTTTGATATTGACGGAACTCTGTGTGATTCTGACCCACTTCATTATCTTGCTTTCCGTGAGATGCTCCAACAGATTGGTTTCAATGGAGGCAATCCTATAACAGAGGAATTTTTTATTGACACTGTTGCTGGCAAGCATAATAATGACATTGCCTTGGCTCTCTTTCCTGGTGAGCTGGAGAGAGGCTTAAAGTTTTTAGATGATAAGGAAGCCATGTTTCGGAGATTAGCAGCTGAGCAACTGAAGGCTTTAAATGGCCTTGATAAAGTGAGAAAATGGATTCAAGATCGTGGGTTGAAACGAGCTGCAGTTACCAATGCTCCAAGACCAAATGCAGAACTCGCTCTCTCAAAACTTGGTCTCTCAGATTTCTTTCAAGCTGTTATTATTGGTGATGAATGTGAACATCCCAAACCTCATCCAGAGCCATACTTGAAAGGCCTTGAAGCTCTAAAAGCATCTAAAGATCACACGTTTGTATTTGAGGATTCTGTTTCAGGAATCAAAGCTGGTGTGGCTGCTGGGATGCCTGTTATCGGTTTATCTACCCGAAACCCAGAGCATTTGCTGATGGGAGCAAAACCCACCTTTCTGATTAAAGATTATGATGATCCAAAATTGTGGGCAGCTCTCGAAGAACTTGACAATTACAGGGGGAAACTTAATGCCAAGGAAATTCCAATGATGGTAGTGCTTTGGACTGTAATATCTTATGCTGTGCCAGGCAAAGTTCCACCTACTGTTCCTAGAAGGTTGTTTTGTCCACTTCCTTGGGATCCTGCATCTTTCTACCATTGGACACTAATGAAGGATATGGTAAATGTACCATTGCTGTATATCTACGGAGCATTTATTCCGGCAATGATGATAGCAGGTTTATACTTTTTTGATCATAGTGTAGCTTCCAAGATGGCTCAACAGAAGGAGTTCAACCTTCAAAAACCATCTGCATACCACTATGATGTTTTTCTCCTTGGAATAATGACTTTGATTTGCGGTCTTCTCGGTCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCCATGCATACAAAGAGTTTAGCAATTCTTCGGAGGCAGATGATTCGAAAGAAGGTGGTGAAAGGTGCCAAGGAATGCATTAGGCACCAAGGGACGAACGCTGAATTATACGGAACGATGCGCTCCGTTTTCATAGAAATGGATGCAGTGCCCACGGCTAGAGAGTTGGAGAATTTGAAGGATGCTGTAATGAATACTAATCCTGGTACAAAGGAAAAGTTTGATCCTGTAAAACATATAGATGCGTATTTGCCTGTTCGAGTTAACGAGCAAAGATTGAGCAACTTATTGCAATCTGTCTTTGTTGCCTTATTACTATTAGCTACATCTCTTATCAAAAGGATACCTACCTCAGTTATTTGGGGATATTTTGCTTACATGGCAATTGATAGTCTTCCAGGGAATCAATTTTTTGAGAGAATTTTGCTTCTTTTCATCACCCCGAAAAGGCAGTACAAAGTTTTGGAAGGCACTCATTCGTCGTTTGTGGAGTCAGTACCATTCAAGACAATAGCTGGATTTACAGCTTTACAGTTTCTATACTTTTTTCTGTGCTATGGTTTAACATGGATACCTATTGGTGGAATATTGTTTCCAGTACCTTTCTTCCTTCTCATAATGCTAAGAGAGAAACTGCTTCCAAGATTATTCAAGGCAAGCCATCTTCAGGAGTTAGATGCTTTTGTTAAACATCGTCCGGCCAAATATTCTTTTTGTATAAAACAAGATGATTGGGATAAATTTGTAGCCCAACATATGACTGCAAAGTTTCAGTTAGTGATGAGAATCGAGAAAGTAGCTGAGAGTCGACTACCTAGTGATAAAGGTTCTTGCAACCCTGGATCATTTGGCAACATTCCCGAGGTAATTGGTTCTTGCAACCCTGGATCATTTGGCAACATTCTATGA 2850 0.4158 MIFLNSLCAMMDRPSPMNSNWPEVYGYGVAELKTLGNELLSSASNINNLPLLLTFVSPSSPPQHVLESLLSLHSFFLPLLPQLPSSSATANTSSSDNAVADQSEFIYLTWLRSKFDEFLKSLIDVLVSDQSDETLKEVVLDTLMEFVKVANGGTFHSSLYNRIISSIIHSASSAEFLIDLLTSKYFKYIDVSYFTFISLEKLARNLQGKDVSDDKTASVDGNDESQLSSKLVKSIDTGNLKRHSNRRRKHRKERTTKSHSPSNSTLCHLTYVVVIPHFICIRCGCSKGSLTGLAPLEAVLFDIDGTLCDSDPLHYLAFREMLQQIGFNGGNPITEEFFIDTVAGKHNNDIALALFPGELERGLKFLDDKEAMFRRLAAEQLKALNGLDKVRKWIQDRGLKRAAVTNAPRPNAELALSKLGLSDFFQAVIIGDECEHPKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLSTRNPEHLLMGAKPTFLIKDYDDPKLWAALEELDNYRGKLNAKEIPMMVVLWTVISYAVPGKVPPTVPRRLFCPLPWDPASFYHWTLMKDMVNVPLLYIYGAFIPAMMIAGLYFFDHSVASKMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAILRRQMIRKKVVKGAKECIRHQGTNAELYGTMRSVFIEMDAVPTARELENLKDAVMNTNPGTKEKFDPVKHIDAYLPVRVNEQRLSNLLQSVFVALLLLATSLIKRIPTSVIWGYFAYMAIDSLPGNQFFERILLLFITPKRQYKVLEGTHSSFVESVPFKTIAGFTALQFLYFFLCYGLTWIPIGGILFPVPFFLLIMLREKLLPRLFKASHLQELDAFVKHRPAKYSFCIKQDDWDKFVAQHMTAKFQLVMRIEKVAESRLPSDKGSCNPGSFGNIPEVIGSCNPGSFGNIL 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03191 949 NCBIfam HAD-IA family hydrolase 377 480 IPR006439 -
Vifa1g03191 949 PANTHER ANION EXCHANGE PROTEIN 526 876 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa1g03191 949 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 296 504 - -
Vifa1g03191 949 Pfam Haloacid dehalogenase-like hydrolase 299 480 IPR041492 -
Vifa1g03191 949 MobiDBLite consensus disorder prediction 242 256 - -
Vifa1g03191 949 SUPERFAMILY HAD-like 293 514 IPR036412 -
Vifa1g03191 949 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 296 504 - -
Vifa1g03191 949 CDD HAD_BPGM-like 298 481 - -
Vifa1g03191 949 MobiDBLite consensus disorder prediction 240 263 - -
Vifa1g03191 949 Gene3D Putative phosphatase; domain 2 311 379 IPR023198 -
Vifa1g03191 949 Gene3D - 297 504 IPR023214 -
Vifa1g03191 949 Pfam HCO3- transporter family 527 660 IPR011531 GO:0006820|GO:0016020
Vifa1g03191 949 Pfam HCO3- transporter family 733 823 IPR011531 GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03191 Vifa-Chr1 499567905 499578240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03191 526 874 Antiporters AT5G25430 68.258 3.65e-173 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03191 K24194 - gmx:100792745 565.074