Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03188 ATGTCGCGTTCGCCGGGAAATTCCAAACCCGATTCCACCGGGTCGGGTAAAATCGCCGATCGGTTTCGTGAAGTGGTGAGTTTAGTAACGAACGCGAAAGCGAAAGCGAAAGCGAAAGCGAATAAACCGGATATTCGTGAACTCGATCATGGTTCACCAGTTTCGCCATTGAGGCGGGGAGGACCGACGGTTAGTAGTAGTTCGGGTTCTTCTGGATCTTTCTCTGGTAATAAGACCGGGTCTATACCGGTTTCGAAGAAGTCGACTTCGGCGCCGATTCATAGCAGTAACTCTGGCGAGCTTTCTGGTTCGAGTGAGAACAGTCCGACGGCTAATAGATCCGGAGGGAATGTGAGAGGTTTGAAACCGAAAGCGGGCGATTCGAGATCCAATTCAGGATCCGGAGCGACTCCGAAGTCACATTCTCCGAAGATACATTCTCCGAAGATACATTCTCCGAAGATACATTCTCCGAAGACACATTCTGGTTCTGGTCAAACTGTGAACTCTCCGCCGGTGCCTGTTCTTCCCGCCGGGAATATTTGTCCTTCTGGAAAGGTCGTGAACACCGGCATGGAGAACAAGAATACAAAGAGTGATGTTCTTGGTTATGGAACTGGGAACTATGGCCACGGTAGTATAATGCGCGCCGGCGCCGGGAGAGTTGATACTAGTAGCGTTAGAGGCGGCATTCGGAGTGATTCGGGGAAAAGAGGGGTGGAGAGTGTGGATCCGGAACAGCTCAAGTTAGTAGGGAATGAGCATTACAAGAACGGTCAATTTGCTGAGGCGTTGAGTTTTTATGACCGTGCTGTTGCTGTTTTGCCGAGAAGTGCATCTTACCGGAGCAACCGCGCCGCCGCGTTGATCGGTTTGGGTAGATTGTCTGAAGCTGTGAGGGAATGTCAGCAGGCACTTTATTGCGATCCTGATTATGATAGGGCTCATCATCGATTGGCTTCTCTATTCATAAGGTTAGGGCAAGTTGAGAATGCTAGGAGACATCTTTGTCATCCTAGATTGACTCCGAATCCGACCGAGATGCTCAAGTTGCAACTGGTGGATAAGCATATTAGTAAGTGTATAGATGTTAGGAGGTCAGGGGATTGGAATAGTGTTCTGAGGGAACTTGATAGTGCTTCTACTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAACTTCATCAAATTGATGATGCAGAATCAGTTTTGTCACATGCTCCGAAATCGGATCCAGAAATTAATCATTCACCTTTTGAAGCAACATTTTTTGGGATGTTTGCTGAAGCTTATTCCTTCTATGTCAGATGTCAGATAGAGATGGCATTGGGAAGGTTTGAGAATGCGGTTACATCTGCTGAGAAGGCAAATCATATTGATCCCCAAAATGTTGAAATTGCTGTTTTGCTTAACAAAATAAGGAAAGTGGCAAGAGCTCGAACTCGTGGCAATGATCTTTTCAAATCTGACCGGTTCACTGAAGCTTGCTCGGCATATGGAGATGGTTTGAGAGTGGACCCTTCAAATTCTGTTCTGTATTGCAATAGAGCAGCATGTTGGTATAAGATTGGTCAATGGCAAAAATCAATTGAAGACTCTAACCAAGCTTTACTTTACCGACCAAATTATACAAAAGCTCTTCTTCGAAGGGCTACATCATATAACAAGCTAGAAAAGTGGGAAGAAGCGGTTAAAGATTACGAGGTCTTGCGAAAAGAACTTCCAAATGACAATGATGTTGCTGAAGCTCTTTTTCATGCAAATATTTCACTCAAAAAATCTCGTGGAGAAGAAGTTACTAATTTGAAGTTTGGTGGTGAAGTGGAACGAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTCATCAGGTGTTTCTGTTGTCCATTTTGAAGGTGCATCAAACTCGAAATGCAGGCAATTATCGCCATTTTTGGATACATTATGTGCCAAATATCCATATGTTAACTTCCTCAAGGTGGACATTTATGAAAACGCGACAGTTGCAACTGCTGAGAATGTTAGATTTGTACCAACCTTCAAGATATACAAAAATGGAAACCAAATGAAGGTAATTGTAAGCCCTAGTCGCGACGTGTTGGAGCAGTCTGTCAAGCATTACAGCCTTTAG 2157 0.4469 MSRSPGNSKPDSTGSGKIADRFREVVSLVTNAKAKAKAKANKPDIRELDHGSPVSPLRRGGPTVSSSSGSSGSFSGNKTGSIPVSKKSTSAPIHSSNSGELSGSSENSPTANRSGGNVRGLKPKAGDSRSNSGSGATPKSHSPKIHSPKIHSPKIHSPKTHSGSGQTVNSPPVPVLPAGNICPSGKVVNTGMENKNTKSDVLGYGTGNYGHGSIMRAGAGRVDTSSVRGGIRSDSGKRGVESVDPEQLKLVGNEHYKNGQFAEALSFYDRAVAVLPRSASYRSNRAAALIGLGRLSEAVRECQQALYCDPDYDRAHHRLASLFIRLGQVENARRHLCHPRLTPNPTEMLKLQLVDKHISKCIDVRRSGDWNSVLRELDSASTAGADSSPQLFMCRAEALLKLHQIDDAESVLSHAPKSDPEINHSPFEATFFGMFAEAYSFYVRCQIEMALGRFENAVTSAEKANHIDPQNVEIAVLLNKIRKVARARTRGNDLFKSDRFTEACSAYGDGLRVDPSNSVLYCNRAACWYKIGQWQKSIEDSNQALLYRPNYTKALLRRATSYNKLEKWEEAVKDYEVLRKELPNDNDVAEALFHANISLKKSRGEEVTNLKFGGEVERVSGLEQFRTAISSSGVSVVHFEGASNSKCRQLSPFLDTLCAKYPYVNFLKVDIYENATVATAENVRFVPTFKIYKNGNQMKVIVSPSRDVLEQSVKHYSL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03188 718 MobiDBLite consensus disorder prediction 37 53 - -
Vifa1g03188 718 MobiDBLite consensus disorder prediction 1 177 - -
Vifa1g03188 718 CDD TRX_family 623 714 - -
Vifa1g03188 718 FunFam TPR repeat-containing thioredoxin TTL4 610 717 - -
Vifa1g03188 718 SUPERFAMILY Thioredoxin-like 521 716 IPR036249 -
Vifa1g03188 718 Pfam Thioredoxin 623 713 IPR013766 -
Vifa1g03188 718 MobiDBLite consensus disorder prediction 59 115 - -
Vifa1g03188 718 Pfam Tetratricopeptide repeat 554 584 IPR019734 GO:0005515
Vifa1g03188 718 SUPERFAMILY TPR-like 390 576 IPR011990 GO:0005515
Vifa1g03188 718 Gene3D Tetratricopeptide repeat domain 243 604 IPR011990 GO:0005515
Vifa1g03188 718 MobiDBLite consensus disorder prediction 157 173 - -
Vifa1g03188 718 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Vifa1g03188 718 SUPERFAMILY TPR-like 245 336 IPR011990 GO:0005515
Vifa1g03188 718 SMART tpr_5 484 517 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 518 551 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 438 471 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 389 422 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 552 585 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 245 278 IPR019734 GO:0005515
Vifa1g03188 718 SMART tpr_5 279 312 IPR019734 GO:0005515
Vifa1g03188 718 MobiDBLite consensus disorder prediction 127 141 - -
Vifa1g03188 718 Pfam Tetratricopeptide repeat 256 316 - -
Vifa1g03188 718 Gene3D Glutaredoxin 611 717 - -
Vifa1g03188 718 MobiDBLite consensus disorder prediction 220 242 - -
Vifa1g03188 718 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 34 715 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03188 Vifa-Chr1 499374083 499377295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03188 486 628 U-box Gene Family AT3G07370 27.778 3.24e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03188 - - gmx:100795358 855.899