Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03185 ATGGGCCGTTTGCACTCAAAAGGTAAGGGTATTTCCGGTTCATCTCTTCCTTACAAGAGAACAACTCCATCATGGCTCAAGATCTCTTCCCAGGATGTTGATGAAACCATCTGCAAGTTTGCCAAGAAAAGGTTAACTCCATCTCAAATCGTGTTATTCTTCGTGACTCCCATAAAATTTCCCAGGAAGCATTTAGAGAGGAATAGGAAGGATAAGGATCCTAAGTTCAGGCTTATTTTGGTTGAGAGCAGGATCCATAGTCTTGCTCGTTACTACAAGAAGACAAAGAAATATGAATCAACAGCTGCCAGTACTCTTGTTGTTTAA 327 0.4098 MGRLHSKGKGISGSSLPYKRTTPSWLKISSQDVDETICKFAKKRLTPSQIVLFFVTPIKFPRKHLERNRKDKDPKFRLILVESRIHSLARYYKKTKKYESTAASTLVV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03185 108 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g03185 108 SMART Ribosomal_S15_2 33 106 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa1g03185 108 Pfam Ribosomal S13/S15 N-terminal domain 1 50 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vifa1g03185 108 SUPERFAMILY S15/NS1 RNA-binding domain 52 97 IPR009068 -
Vifa1g03185 108 Pfam Ribosomal protein S15 53 97 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa1g03185 108 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 52 IPR023029 -
Vifa1g03185 108 Gene3D - 54 108 - -
Vifa1g03185 108 SMART Ribosomal_S13_N_2 1 51 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03185 Vifa-Chr1 498699518 498699923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03185 1 108 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 55.629 1.36e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03185 K02953 - mnt:21408265 147.902