Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03179 ATGGATTCCAATAAGCTTCAGTCTCGCTTCTGTCTAGTCAGACAATCCTCTCGGGCAACGGACCGTGAAAATTCCGGTACCGTCGACGTGCCGGAAACGGTAGCGTTGAATCCGACGGTTCGATTGATGTATTTATCAAACGAAGGCGACTTGGAAGCAATCAACGTGCTTTTAGACGACGGATGTGACGTCAATTACCGAGACAATGACGGCCGCACCGCTCTCCATATCGCGGCATGTCAAGGCCGAACTGATGTTGTCCAGTTGTTGATTCAAAGAGGTGCTGAAGTTGATCCGCAAGATCGTTGGTGCAGCACTCCTCTTGCTGATGCGTTGTACTACAAAAATCATGATGTTGTCAAGCTTTTGGAGCAACATGGTGCAAAACCCCCGGTGGCTCCTATGCATGTCCAGGATGCCCGTGAAGTCCCTGAATATGAGATTGATTCATCTGAACTTGATTTTACAAATAGTGTTTGCATAACAAAGGGAACTTTCCGGAGTGCATTATGGGGTGGAATTCAAGTAGCTGTTAAAACTCTTGGGGAGGAAGTATTCACTGACGATGACAAAGTAAAGGCATTTCACGACGAGCTTACGTTACTTCAGAAAGCAAGGCATCCAAATGTTGTCCAATTTTTGGGTGCCGTGACACAAAGCACCCCAATGATGATTGTCACAGAATATCTACCCCAGGGGGATCTTCGAGCCTACTTAAAGAGGAAAGGTGCATTAAAACCATCTACAGTTGTGAAGCTTGCACTAGATATTGCTAGGGGAATGAACTATTTGCATGAACACAAGCCTGATCCCATAATACACCGAGATCTTGAGCCTTCAAATATTCTCCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTCACTCAAAATCACTAAAACAGTCAAAGAAGACAAACCTGTGACATGCCAGGATACATCATGGCGGTATGTTGCACCTGAGGTTTACCGAAATGAGGAATATGACACCAAAGTGGATGTGTTTTCTTTTGCTTTGATATTACAAGAGATGATTGAAGGTTGTCCACCATTTTATAGAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTGGAAAATGAGCGGCCACCGTTTAGGGCATCACCAAAGCTTTATGCTAATGGATTAAAAGAGTTAATTGAGGAATGTTGGGATGAAGAACCATACAAAAGACCAACATTTAACAAAATAATACAGAGGTTGGATAATATCAACCATCATCTTGCTCAGAAGAGGCGTTGGAAGGCTTTGACTCCTTCATGCATATGGAGTTTGGACGCCTTGTTTAAGGGATATCCTAGAAATCATGATAGCCGATCAGCTCGCTCTACGGTTAGATAA 1374 0.4367 MDSNKLQSRFCLVRQSSRATDRENSGTVDVPETVALNPTVRLMYLSNEGDLEAINVLLDDGCDVNYRDNDGRTALHIAACQGRTDVVQLLIQRGAEVDPQDRWCSTPLADALYYKNHDVVKLLEQHGAKPPVAPMHVQDAREVPEYEIDSSELDFTNSVCITKGTFRSALWGGIQVAVKTLGEEVFTDDDKVKAFHDELTLLQKARHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRAYLKRKGALKPSTVVKLALDIARGMNYLHEHKPDPIIHRDLEPSNILRDDSGHLKVADFGVSKSLKITKTVKEDKPVTCQDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYRKPENEVPKAYVENERPPFRASPKLYANGLKELIEECWDEEPYKRPTFNKIIQRLDNINHHLAQKRRWKALTPSCIWSLDALFKGYPRNHDSRSARSTVR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03179 457 Gene3D - 4 144 IPR036770 -
Vifa1g03179 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vifa1g03179 457 Pfam Ankyrin repeats (3 copies) 42 130 IPR002110 GO:0005515
Vifa1g03179 457 PRINTS Ankyrin repeat signature 71 86 IPR002110 GO:0005515
Vifa1g03179 457 PRINTS Ankyrin repeat signature 119 133 IPR002110 GO:0005515
Vifa1g03179 457 PIRSF ILK 3 434 - -
Vifa1g03179 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Vifa1g03179 457 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Vifa1g03179 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Vifa1g03179 457 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
Vifa1g03179 457 SUPERFAMILY Protein kinase-like (PK-like) 161 412 IPR011009 -
Vifa1g03179 457 Pfam Protein tyrosine and serine/threonine kinase 171 412 IPR001245 GO:0004672|GO:0006468
Vifa1g03179 457 SMART ANK_2a 36 66 IPR002110 GO:0005515
Vifa1g03179 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vifa1g03179 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vifa1g03179 457 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Vifa1g03179 457 CDD STKc_MAP3K-like 161 412 - -
Vifa1g03179 457 Gene3D Transferase(Phosphotransferase) domain 1 150 421 - -
Vifa1g03179 457 SUPERFAMILY Ankyrin repeat 41 133 IPR036770 -
Vifa1g03179 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vifa1g03179 457 ProSiteProfiles Ankyrin repeat profile. 37 69 IPR002110 GO:0005515
Vifa1g03179 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 107 420 - -
Vifa1g03179 457 FunFam Integrin-linked protein kinase family 19 146 - -
Vifa1g03179 457 ProSiteProfiles Protein kinase domain profile. 155 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03179 457 FunFam Os01g0748600 protein 141 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03179 Vifa-Chr1 497580659 497585295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03179 1 426 MAP Kinase Kinase Kinase AT4G18950 65.197 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vifa1g03179 PK_Tyr_Ser-Thr 2.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03179 - - gmx:100795964 739.569