Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03172 ATGGCAATGGCTTCTACATTATATTTCTTTGCAATATTATTATTCTACTACCTCAATTTGTTTTCCGTGAATGCAAATTCCTACAGAGAATTCCTGCAAATGGGGCAATCAGTCAGAACTTCAGACACAGTTGTTTCATACGGTGGAAACTATAAACTTGGATTTTTCACAAGAGACAGAGATAACTCCACCAAGTACTATGTAGGTATATGGTTCCAAAAGGTACCAAATGACAAGGTTGTCTGGGTTGCCAACAGAGATTACGCATTCCAGACATCTTCGGCGTTTCTTACCATTCAACCTGATGGTAACATTGCGATCAGAGATGGACAAATGATGTACCTCGTGACTAATGTTCCGAACAGCAGTTATAGTACCTATGCAACGCTGTTGGACTCGGGAAACTTAGTACTTTTGAACAACTCTAACAAAAGGATTCTATGGCAGAGTTTTAATAATCCAACTGATACTCTTTTACCTGGAATGACAATCGGACACACCGACACAGGATACAATTTGTCATTAACATCATGGACAAGTGCAGACGATCCTGCTACCGGACCATATACTCTCCAATTTAATTTCGGCTCAGCGAGTCTAACTGTAAATAAAGGTTCTAATGTCTTGTGGATTGATGGTAATTCCAATTTATCTATTCAGACTGTTTTCAACCGAGCGGGTTTGGATTTGGAACAGAATATCTACAAGGACTATTTCAGTCTTCCAATATATAGCAATTCTAGATTTGTATTGGATGTGTCTGGGGATCTTAAATACGAAGGTTGGTCTGAGAAATCCAAGCGTTGGCTTTCTCTACAATCGTCCAAGTGCGGAACAAACAATTCGTGCGGAGTATTTTCCATTTGTAATCCACGAGACCATGATCCTTGTCAGTGTCTAGAAGGTTTTGAACCCTTTGATACTGATTCTTGGGGGAAGGGGGACAGATCAGCTGGATGTGTCAGGCTAAAGAACTTGTCCTGCAACACTACAGATGGATTTGTTCGATTCTTATCAGTCGAATTGCCTCCAAATCATGCCAACCTGATGCTGAATTCTCAAGCACAATGTAACCACACTTGCTCCACCAATTGTTCTTGTCTTGCTTTTGCTTATGATTTGTTTGCTGTTAACTGCATGTTGTGGAACGAAGAAGTACTGACTCTGAAGAACATCTCAACTGATAATCAAGATGCTGATAAAAACAAACCAATTTATTTTCTCAAAGTTGCTGCCTCAGACATTCTTACCACAAGCAATGTAACAAATGCAGCTAACAGACATGGAAACAGGAAGAGGAATCTAATTCTAATTGTTATTTTGACCTCATTTCTAATATTGCTTATACTGCTTGGCTTATTTGTTTACCGAACAAGAAAGCAAAGTAAGAAAGGGGATGATTTACTAAATTTTGAAGTAGGCATGAGCATGAAAGTTAATAAAAACTCTGACAAGGGTACGAAAGTTAAAAGGAAAGAAGTCAAGTTACCACTATTCAGTTTTGTGAGCGTTTCAGCCGCAACTAATAACTTTGCAGACACAAATAAACTCGGTGAAGGTGGCTTTGGACCTGTTTATAAGGGTAAGTTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCTAAAAGATCAGGTCAAGGATGGGAGGAGTTGCGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAATCTAGTTAGACTTCTTGGCTGCTGCATTGAGAGAGATGAGAAAATGCTTATTTATGAATTCATGGCTAATACAAGTTTGGATTGTTTTCTCTTTGATGCGGAAAAAAGAGAGATGCTAGATTGGGGAACACGGGTTCGAATAATTGAAGGGATTGCACAAGGACTCCTTTATCTGCATCAATATTCTAGGTTCAGAATCATTCACCGAGATTTAAAAGCTAGCAACATTCTATTAGACACCAACATGAATCCTAAAATATCGGATTTTGGAATGGCGAGGATATTTAGTGAGAATGTTCTTCAAGCAAATACAAATCGGATAGTTGGAACTTATGGATATATGTCTCCTGAATATGCGATGGAAGGCGTTTTCTCGATTAAGTCAGACGTGTTTAGCTTTGGAGTCCTTTTGTTAGAGATTATAAGTGGCAAGAAGAATACTGGTTTTTATCAAACAAATTCCTTCGATCTTCTTGGATATGCTTGGGATCTATGGACCAACAATTCTGGAGTGGACTTGATTGATTCAAAATTGGATGATATCTCCAACAAACATTTAGTGACAAAATACGTGAATATAGGACTTCTATGTGTACAACAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTCTCAATGATCGGCAATGACACTGCATCCCTTCCTAGTCCAAAGCCACCAGCATTTCAAAATGTGAGAGGTACTGAAAGTTCAAGTCTCTCTGGAAGCACTAGAGAAAACATTTCTGTCAATGTTGTCACAAATTCAATAGTTGAAGCAAGATGA 2487 0.3864 MAMASTLYFFAILLFYYLNLFSVNANSYREFLQMGQSVRTSDTVVSYGGNYKLGFFTRDRDNSTKYYVGIWFQKVPNDKVVWVANRDYAFQTSSAFLTIQPDGNIAIRDGQMMYLVTNVPNSSYSTYATLLDSGNLVLLNNSNKRILWQSFNNPTDTLLPGMTIGHTDTGYNLSLTSWTSADDPATGPYTLQFNFGSASLTVNKGSNVLWIDGNSNLSIQTVFNRAGLDLEQNIYKDYFSLPIYSNSRFVLDVSGDLKYEGWSEKSKRWLSLQSSKCGTNNSCGVFSICNPRDHDPCQCLEGFEPFDTDSWGKGDRSAGCVRLKNLSCNTTDGFVRFLSVELPPNHANLMLNSQAQCNHTCSTNCSCLAFAYDLFAVNCMLWNEEVLTLKNISTDNQDADKNKPIYFLKVAASDILTTSNVTNAANRHGNRKRNLILIVILTSFLILLILLGLFVYRTRKQSKKGDDLLNFEVGMSMKVNKNSDKGTKVKRKEVKLPLFSFVSVSAATNNFADTNKLGEGGFGPVYKGKLLNGDEVAVKRLSKRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIERDEKMLIYEFMANTSLDCFLFDAEKREMLDWGTRVRIIEGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFSENVLQANTNRIVGTYGYMSPEYAMEGVFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSFDLLGYAWDLWTNNSGVDLIDSKLDDISNKHLVTKYVNIGLLCVQQSPEDRPTMSDVVSMIGNDTASLPSPKPPAFQNVRGTESSSLSGSTRENISVNVVTNSIVEAR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03172 828 FunFam Uncharacterized protein 487 586 - -
Vifa1g03172 828 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Vifa1g03172 828 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Vifa1g03172 828 Pfam S-locus glycoprotein domain 231 305 IPR000858 GO:0048544
Vifa1g03172 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 151 - -
Vifa1g03172 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Vifa1g03172 828 Pfam Protein tyrosine and serine/threonine kinase 515 780 IPR001245 GO:0004672|GO:0006468
Vifa1g03172 828 Pfam PAN-like domain 328 387 IPR003609 -
Vifa1g03172 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Vifa1g03172 828 MobiDBLite consensus disorder prediction 784 810 - -
Vifa1g03172 828 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
Vifa1g03172 828 CDD B_lectin 43 154 IPR001480 -
Vifa1g03172 828 SMART ntp_6 329 403 IPR003609 -
Vifa1g03172 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 789 - -
Vifa1g03172 828 Gene3D Transferase(Phosphotransferase) domain 1 587 788 - -
Vifa1g03172 828 Pfam D-mannose binding lectin 80 178 IPR001480 -
Vifa1g03172 828 Gene3D - 24 152 IPR036426 -
Vifa1g03172 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 184 IPR036426 -
Vifa1g03172 828 SUPERFAMILY Protein kinase-like (PK-like) 496 802 IPR011009 -
Vifa1g03172 828 CDD PAN_AP_plant 325 411 - -
Vifa1g03172 828 Pfam Domain of unknown function (DUF3403) 783 828 IPR021820 GO:0004674
Vifa1g03172 828 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 113 803 - -
Vifa1g03172 828 CDD STKc_IRAK 517 781 - -
Vifa1g03172 828 SMART serkin_6 511 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03172 828 SMART blect_4 35 154 IPR001480 -
Vifa1g03172 828 SUPERFAMILY Hairpin loop containing domain-like 331 394 - -
Vifa1g03172 828 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03172 Vifa-Chr1 495969336 495972269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03172 435 796 Receptor kinase-like Gene Family AT4G23190 53.406 1.35e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03172 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03172 - - psat:127086248 1443.71