Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03171 ATGCACACAAACACAAGAATGGAACCATCATTCAAGTCCATCTCATGCACTAGAAAAGGTTCGTATATATTAGAAACCAGAAACTTATCATACAAATTGTGCAGCAAATTTGATGAATTTAGAAGTCTTTGTTATGGTTTGAATCCTAGGAGAGGTTCAAGGTTCATTTTGAAGAATGTAAACTGTGAAGCAAGGCCAGGGGAGGTTACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACCACACTGCTCGAAATTCTTGCTGGGAGAATACCCGCCTGTAAAGTTTCCGGACAAGTACTTGTCAATCACATGCCTATGGATGTGAACAGATTCAGACGAGAATCCGGGCACGTCGCACAAGAAGATGCTTTGTTTCCATTGCTTACGGTTAGGGAGACGCTCATGTATAGTGCTTTGTTGAGGCTTCCCGGAGGGCGGAAAGTGGGTGCTACGAGAGTTGCAGAGTTGATGAAGGAGCTAGGGTTGGATTCTATTGCAGATTCAAGAATCGGCAATGGATCAGATCATGGTATATCGGGCGGGGAAAGGCGCAGAGTTTCCATTGGTGTTGACTTGGTTCATGATCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGTTTGGATTCAGCATCGGCTCTTAGTGTAATCTCGTTGCTTAGACTAATGGCATTTAATCAAGGTAAAACAGTTGTTTTAACTATCCACCAACCTGGTTTTCGAATCTTAGAGCTACTCGATAGCCTCGTTTTGCTATCGGATGGATTTGTCACGCATAACGGTTCTTTGAATCTTCTGGAGGCAAGGCTCAATTTATCTGGCCATCGCATTCCTAACCATGTCAATGTCCTAGAATTTGCTCTTGATGTCATGCAAACCTTGGTTATACATACTTCAGAATCCGGCCGGAGCAATCAATTTGTTCTCAATGACGACAAAGAGCACCAAGATGACAAGATGAGGATGATACAGTGCTCTATGATTGTCAAAGAAAAGGCTATGTTGTACTCTAATTCTCCAATGGAGGAGATTGTAATCCTAGGACAAAGATTTTGCAGCAACATATTCAGAACCAAACAACTCTTTGTTACAAGGGTCATACAAGCCTTAGTAGCTGGATTTGTATTGGGAAGCATATTCTTGAACGTTGGCAACAAACAAAGTAAAATAGCATTACAAACGCGAAGCGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGTCTACCTATTTTCTTAGAGGAGAGAACAACATTCATGAGAGAGACCTCAAGAGGAGCTTATCGAGTTTCTTCATATGTTTTAGCAAATACATTTGTGTTTCTTCCTTTTCTTCTAATGGTTGGTCTGCTTTATACTAGTCCAGTTTATTGGCTGGTAGGCTTACGAAAAGACATAGCCGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTATTAATGTCGAATTCTCTTGTCGCGTGTTTCAGCGCCCTGGTCCCGAATTTCATTCTCGGAAGCTCGTTGATTGCCGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGGTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTATATAAGTCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGTGAGCAAGGGAAAAAGAGATGCATAGAAGTTAACAACTATGGGGAATGCACATTATATGGAGTTGAGTTCTTAAGTCAACAAGGTCTGAAAGAGTCACAGAAATGGACTAATTTGGGTTTAATGTTAAGCTTCATAATAGGGTATAGACTGCTTAACTTTATAATTCTTTGGTCTAGATGTTACACAAGCAGAAAATAA 1869 0.4056 MHTNTRMEPSFKSISCTRKGSYILETRNLSYKLCSKFDEFRSLCYGLNPRRGSRFILKNVNCEARPGEVTAIAGPSGAGKTTLLEILAGRIPACKVSGQVLVNHMPMDVNRFRRESGHVAQEDALFPLLTVRETLMYSALLRLPGGRKVGATRVAELMKELGLDSIADSRIGNGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVISLLRLMAFNQGKTVVLTIHQPGFRILELLDSLVLLSDGFVTHNGSLNLLEARLNLSGHRIPNHVNVLEFALDVMQTLVIHTSESGRSNQFVLNDDKEHQDDKMRMIQCSMIVKEKAMLYSNSPMEEIVILGQRFCSNIFRTKQLFVTRVIQALVAGFVLGSIFLNVGNKQSKIALQTRSGFFAFSLTFLLSSTTEGLPIFLEERTTFMRETSRGAYRVSSYVLANTFVFLPFLLMVGLLYTSPVYWLVGLRKDIAGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGSSLIAGLMGSFFLFSGYFISKEKIPSYWIFMHYISLFKYPFECLMINEYGGEQGKKRCIEVNNYGECTLYGVEFLSQQGLKESQKWTNLGLMLSFIIGYRLLNFIILWSRCYTSRK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03171 622 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Vifa1g03171 622 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 607 - -
Vifa1g03171 622 FunFam ABC transporter G family member 10 41 286 - -
Vifa1g03171 622 Pfam ABC-2 type transporter 344 555 IPR013525 GO:0016020|GO:0140359
Vifa1g03171 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 270 IPR027417 -
Vifa1g03171 622 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Vifa1g03171 622 Gene3D - 19 279 IPR027417 -
Vifa1g03171 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 280 IPR003439 GO:0005524
Vifa1g03171 622 SMART AAA_5 66 257 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03171 Vifa-Chr1 495908288 495910156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03171 49 267 Calmodulin-binding Proteins AT2G36910 27.876 5.03e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03171 K05681 - gmx:100776372 999.964