Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03168 ATGCCTATGGATATTTTCTATTTTCTTTCATGTGTTCTGTTTCCTCTGTTTGTTCTGTTCTTTTTCAATTTCTTGAGGCACAAGCAACAAAGTAATAATCACAAAAGAAAGCTTCCACCAGGTGAAATGGGGTTTCCATTCATAGGTGAGACCATGAAATTCTTCGATGCTCAAAGAAGAAACAAATTGTATGAAGAGTTTGTTCATCCTCGAATCACGAAACACGGAAAGATCTTCAAAACAAGGATCATAGGTTCACCAACTGTGATTGTGAATGGAGCTGAAGCCAACAAGTTTCTTCTATCCAATGAGTTTAAGCTGGTGAAAAGCTCTTGGCCTGCTTCCTCAGTTCATCTCATGGGAAAAGACTCTATCATGGAGAAAGACGGCGAAAGACATCGATCCCTTCGTGGCGTTATAGCAACTAGTCTTGGCTATGCAGAACTTGAAAGACTAGTTCCAAAATTATGCAACTTTGTTCAATTATATTTGTCTAAAAATTGGCGCGGTCGTGATGAGATTAGTCTCTACCGTTCGACGAAAGTTCTTACATTCAACATTGTTTTCGAGTGTTTGTTAGGGATCAATGTCGAACCGGGTATGGTGGATACATTTGAGAGAGTGTTGGAAGGAGTTTTCTCTATGGGAATTAGGTTTCCTGGTTCTAAATTTTGGAGAGCAATGAAAGCTAGAGAGGAGATAGAAAAAATGATCATGAAAGTTGTGAGAGAGAAGAGAAAGGAGATTGAAGAAGGAAAGTTGAAAAGAGAGGAAGATAGAATGCTAATGTCTAAGTTAGTATATGGAATGATTCAAGGTGAAATCACTGAAAAAGAGATTATAGATAATGTGGTTTTGCTAGTTTTTGCAGCTCATGATACTACTTCTTTTGCTGTTGCTATGACTTTCAAGATGCTTGCTCAACATCATGATTGCTATGGTAAAGTTCTACAAGAACATGTTGATATAATGAGAAATAAAAGATGTGGTGAGGGTTTGAATGTAGATGACATAAAGAAGATGAAGTATACATGGCAAGTTGCTAGAGAAAGCATGAGACTTTTCCCTCCAATATTTGGTTCTTTTAGGAAAGCAATTACTGATATTGAATATGAAGGATTCACTATACCTAAAGGATGGAAGATGCTATGGACAACATATGGGACACATTACAATGAAGAGTATTTTAAGGATCCTATGAGTTTCAATCCAAGTAGGTTTGAGGAAGGAATGCCACAATATGCATATGTTCCCTTTGGAGGAGGACCAAGAGTTTGTGTTGGGTACCAATTAGCTAAACTAAATATCCTCATTCTTGTTCATTATGTTGTGACACAATATGATTGGTTCTTAATCGATCCTAATGAAACAGTTTCAATGGATCCTCTACCATTTCCTTCTCTTGGAATGCCAATTAGAATTTCTCCTAAGCATGTATAA 1440 0.3701 MPMDIFYFLSCVLFPLFVLFFFNFLRHKQQSNNHKRKLPPGEMGFPFIGETMKFFDAQRRNKLYEEFVHPRITKHGKIFKTRIIGSPTVIVNGAEANKFLLSNEFKLVKSSWPASSVHLMGKDSIMEKDGERHRSLRGVIATSLGYAELERLVPKLCNFVQLYLSKNWRGRDEISLYRSTKVLTFNIVFECLLGINVEPGMVDTFERVLEGVFSMGIRFPGSKFWRAMKAREEIEKMIMKVVREKRKEIEEGKLKREEDRMLMSKLVYGMIQGEITEKEIIDNVVLLVFAAHDTTSFAVAMTFKMLAQHHDCYGKVLQEHVDIMRNKRCGEGLNVDDIKKMKYTWQVARESMRLFPPIFGSFRKAITDIEYEGFTIPKGWKMLWTTYGTHYNEEYFKDPMSFNPSRFEEGMPQYAYVPFGGGPRVCVGYQLAKLNILILVHYVVTQYDWFLIDPNETVSMDPLPFPSLGMPIRISPKHV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03168 479 Pfam Cytochrome P450 39 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 FunFam Taxadiene 5-alpha hydroxylase 29 477 - -
Vifa1g03168 479 SUPERFAMILY Cytochrome P450 33 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 Gene3D Cytochrome P450 27 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PANTHER CYTOCHROME P450 26 35 464 - -
Vifa1g03168 479 CDD CYP90-like 71 476 - -
Vifa1g03168 479 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Vifa1g03168 479 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03168 479 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03168 Vifa-Chr1 495522309 495523987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03168 19 382 Cytochrome P450 AT2G42850 61.853 6.58e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03168 - - gmx:100793336 754.977