Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03165 ATGGAACATTTATGCAATGATATCCTTGAAGGATCTAAGGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGATGACACTTTTCAGTCTAGTCAGAGGCGTGTTGTTTCTGGAGCCATCAACCTTGAACATGAATCCACTATAAACAGATCTAAATCATTTGGCTCTAGTAATGAAAACTCGATCTTATTGCGTCCCTCATCTCCAAGATTTACACATCATGAGGAGGATATTAATGTAATTCAGCATTCCAATGAGACTGCCCTGGGCTGCATGCCTGAGAGTTTAACTTGTGAAGACCCGAATGATGAGATTGTAAATGTTAAACGCATGAAGTTTTCTCTGCATGAACTTCCTTGTAGTAGATCTAATTCAGAAGACATTCTGGGTTCATCTGGAATTCCGAAAGTAGTAATTTCCAACCTGCCTTGTGCTGCTACAGATTGTGATAGTGACCCAATTGCATTTCGGACAGTTGAATCATCTAAACTTGGCGTGGTATCTAGTTGCTGTCTACTGAAGCATAACTTGGTACAGAATAAACATGCTTCGAATAATGATGTAGATATTACAAACTATAAATCTCAAACTGCAAATGGGAACATCACAAAAGAAATGTCTGCAAATAAGGTAGTTGCTTCTCCTGTATCCCAGGAGAGTTCAGCAAACAGGCTAGCTGTAACGAGTTCATCAATCACTTTTGCAAAGAAGTCTTCCTATCCTTTAAAAACTGAGGAAAGGGCAGAAGGGTTTCAATCTTCTAATATGACTATCTCAAATTTAGTGTCAAAGCTAGACAAAGGGGATCCCCGTTCCATACTGCAGTTTCACATTGTGCAGTTGCTTACGATGTCAGGCTGGTCTATTGGGAAGATTCAACGGCCTTGTAGGCGGTGGATGGAGTCAATCTACAAGACACCAAAGGGAAAAACTATTAGGGAATTTACCAAAGTTTGGAGATTATGTGGCCATCTTTTGTCTGTTGAAAAATGCAAAGTACCATATGAAGGCCGTAAGGAATGGGCGGGTATTAGTGATTTCTGGGCTGATCTACTGAGTGCTCTGACAAATGTTGATAAATCAAAAACCCAGTCAGAAACAGCAGCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTTGTAGTTGTATATTTTGATAGAAAGATCGGTGCTCTGAAAAGGGGAGAGGTAATAAAAGCATCTAGTAGTTTAGTTTCTAGTAAGGGTAAAATGGCATATGATCCAGTTGATTCAGGCCGGGAAGATAGTTTTCGTGCTCATTCTGATCAAAAGCACGGCCAAGCCGTTTTATGTGACTCTTCAACAGCAACCGGAGCCACTAAAATATCTGCTTTTGTGATAAACAATCATGCTTGTAATCAGAAATCTGGTGGCAATCAAGAAGATATGTATGTTGGAGAACACAAACCAAATGTCATAGAAAATCGATGTAGGGAAATGTCAGTGAGCATAAGTGGCATGGATCTAGTGTCCTTACCTGCTTGTGCATTGGGCAGCACTGTTACCCAATCAAATGCTTCCTCTTTCGATGTTCTTCCAAGCTCAGGAAATTTGGACTTGGATTCTGAAGGGAATGCTGTTCATCAAGATAAACTTAGAGATTCCAAAAGCTTTGATAAGTATACATCAGATAATCGGTCAGAGTATAGTGAAGAAGAGGGGAGGAAAATCTCAGTGGCTTCTGTATTTGGGAAAGATAGTACATGGTCCTCACCTAATGGTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGATATCTCAAATTAAACTGAGTATGTTATACCATAGTGACATACTGGGATCAACTATCACTGACCAGGTGCAGTCGTCGAATGGTGATGCATGTGGCACTCAAGCTGGGTTGGAAGAAGTTCAGAATTATGTAGTTGACAGTGTGGGGAAAAAAAGGAACTGCAAGAAGTTATCGGGCACTGTAAACCAGCGACATATTAAGAAAAAAAAGTCCAATAGGTGCCATATTGAAGATGATGATCTATTAGTGTCAGCAATATTCAAGAATAAGGACTTCAACCCAAAGACAATCCGAGGCAATTCTAGAGCTAAACCTGGCAAATCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGTCGTTGTAGGTTGCTACCAATGAACCCTTGTTATGGAGGGAAGCACAATAAGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTATCTTGTCTTGGCTGATTGAGAATGGGGTCTTATCTTTAAATGATATCATTCAATATCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGTAAAATCACTAAAGATGGTATTGTTTGTAAGTGTTGCAGTAAGGTGCTTACATTATCAGAGTTCAAGAATCATGCTGGATTTACAGTGAGTCGCCCTTGTTTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACAATTTGCCTCCTTCAAGCTTGGTCAGCTGAGTACAAAGCCAGGAAAAGTCAAAATCAACCTGCGAATGTTGTTGATAATGATAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGCCCTTCTACTTTTCACCTGGCTTGTTTGTCGGTTCAGGAAATCCCTGAAGGCAACTGGTACTGCATAAACTGCACTTGCCGGATTTGTGGAAATTTGGTCATTGATAAAGAGGCTTCAGATACACAAGATTCATTACAATGTTCACAATGCGAACATAAATATCATGAGAAATGCCTAGGAGAAGGAGCTAACCCAGAAGGAGCAGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCTAGTCTCCAATCTCAGGTGGGGCTAGTTAATCAAGTTGCCAATGGCTTTTCATGGACGCTTCTTAGATGCATACATGATGATCAAAAGGTTCATTCTGCTCAGTGGTTATCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAATGTTTTGTGTCAATGTTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTGTGGTGTTGGAGAAACAAGATGTGTTAATATCTGTAGCATCTATCAGAGTGCATGGGACTACAGCTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGTCGACTCCTTGTGAACTCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCCGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGGTGACAGTGAAAAGCGGAGATTAAAAAAGCTCAATTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAAATGAAGGACTGTATGATCAATCAACTTTGGCATTAGGTGAATTGTCTGAAGTAGATATCTGTTCTGAAAGAATGACCATAGCCGAATCATTGCCCCAAGATTTTGGGTATGTAACTACCAATGAAGTTGGTGCTAAGTCAGATTATGAACCTGTGGACTGCAAAAGTCAACCAGGCAATAGGACTGACAGTGAAGGCTACAGAGTTGATAATAATCAAGCAGTTGAAATCATCCCTTTTGAAGGAAACAACGTGCAGGAATTGATAACAAGTAACATAATGCAAATTGAGAACTGTTGTGCTAACAAAGATGGTACTGAATCTGGTGTAGGACTTATCGATGACAAGAGTATCAAAATAGACAAAGTTGAGGAAAATGCTTCGCATGAACATGTTTCAAGTATGTCATGCAAAACATTTTCGGGCAACAATTTTGACACAGTTTCTAATTTTGAATGCTCAGTGATGTATGATGAAACAGCTCTTTTTGGAACATTAGCAAACTCTGAAAAATCAATGGAAAGTTTAAATTAA 3993 0.3984 MEHLCNDILEGSKEERQIFTEVFFGDDTFQSSQRRVVSGAINLEHESTINRSKSFGSSNENSILLRPSSPRFTHHEEDINVIQHSNETALGCMPESLTCEDPNDEIVNVKRMKFSLHELPCSRSNSEDILGSSGIPKVVISNLPCAATDCDSDPIAFRTVESSKLGVVSSCCLLKHNLVQNKHASNNDVDITNYKSQTANGNITKEMSANKVVASPVSQESSANRLAVTSSSITFAKKSSYPLKTEERAEGFQSSNMTISNLVSKLDKGDPRSILQFHIVQLLTMSGWSIGKIQRPCRRWMESIYKTPKGKTIREFTKVWRLCGHLLSVEKCKVPYEGRKEWAGISDFWADLLSALTNVDKSKTQSETAAMLAYQWWLLDPFVVVVYFDRKIGALKRGEVIKASSSLVSSKGKMAYDPVDSGREDSFRAHSDQKHGQAVLCDSSTATGATKISAFVINNHACNQKSGGNQEDMYVGEHKPNVIENRCREMSVSISGMDLVSLPACALGSTVTQSNASSFDVLPSSGNLDLDSEGNAVHQDKLRDSKSFDKYTSDNRSEYSEEEGRKISVASVFGKDSTWSSPNGILKKKMRRKCKRISQIKLSMLYHSDILGSTITDQVQSSNGDACGTQAGLEEVQNYVVDSVGKKRNCKKLSGTVNQRHIKKKKSNRCHIEDDDLLVSAIFKNKDFNPKTIRGNSRAKPGKSRGLRKLKSHKGRCRLLPMNPCYGGKHNKDGKKYYLGERTILSWLIENGVLSLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCSKVLTLSEFKNHAGFTVSRPCLNLFMESGEPFTICLLQAWSAEYKARKSQNQPANVVDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSVQEIPEGNWYCINCTCRICGNLVIDKEASDTQDSLQCSQCEHKYHEKCLGEGANPEGAVSDTWFCSQSCQEVYSSLQSQVGLVNQVANGFSWTLLRCIHDDQKVHSAQWLSLKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTAAEMPLIATCSRYRRQGMCRLLVNSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDSEKRRLKKLNLMVFPGTVLLEKSLYGKKKNEGLYDQSTLALGELSEVDICSERMTIAESLPQDFGYVTTNEVGAKSDYEPVDCKSQPGNRTDSEGYRVDNNQAVEIIPFEGNNVQELITSNIMQIENCCANKDGTESGVGLIDDKSIKIDKVEENASHEHVSSMSCKTFSGNNFDTVSNFECSVMYDETALFGTLANSEKSMESLN 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03165 1330 Gene3D - 996 1133 - -
Vifa1g03165 1330 SUPERFAMILY FYVE/PHD zinc finger 892 951 IPR011011 -
Vifa1g03165 1330 Pfam Tify domain binding domain 774 824 IPR032308 -
Vifa1g03165 1330 SUPERFAMILY FYVE/PHD zinc finger 834 892 IPR011011 -
Vifa1g03165 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 841 895 IPR013083 -
Vifa1g03165 1330 PANTHER PHD FINGER FAMILY PROTEIN 11 1291 - -
Vifa1g03165 1330 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 999 1149 IPR000182 GO:0016747
Vifa1g03165 1330 Coils Coil 1319 1330 - -
Vifa1g03165 1330 Pfam PHD-finger 852 893 IPR019787 -
Vifa1g03165 1330 ProSiteProfiles Zinc finger PHD-type profile. 849 894 IPR019787 -
Vifa1g03165 1330 CDD PHD1_AIRE 852 891 - -
Vifa1g03165 1330 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 999 1124 IPR016181 -
Vifa1g03165 1330 SMART PHD_3 851 892 IPR001965 -
Vifa1g03165 1330 SMART PHD_3 893 947 IPR001965 -
Vifa1g03165 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 896 951 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03165 Vifa-Chr1 495110141 495118311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03165 1 404 PHD Transcription Factor Family AT3G14980 29.412 1.37e-39 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g03165 TDBD 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03165 - - mtr:25487250 2120.12