Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03157 ATGATTACCAACGGAGTGTGCAGTCTCCGCCCGTGCCTCCGTCTCCCGGAGCATCAAATATTTCGTGCAGCCCCACTCTCCTACCATTTCCGGCGCCGCTTTCTCGTCACCGCATCGTTATCGGAGAAAAATAAAGAGAAGGTGATAGTTATTTCTGGACCCACCGGTTCCGGCAAAAGCCGTCTCGCAATGGAACTCGCAAGGCGCCTCAATGGAGAAATCGTTAGTGCCGATTCCGTTCAGGTGTATCGGGGTCTTGATATTGGATCTGCAAAGCCTTCCTTAAATGATAGAAAGGAAGTGCCGCATCATCTGGTTGACATACTTCACCCATGTGAAGATTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCGACAAGATCTATTCTTGACAAGGGCCGCATTCCTATAGTTGTTGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTAAATCCTCTACAGAGATAACATCTCAAGTAAGTAAAGAGTTAGCTGAATTTCAGAGAAATGACGACTGGGATGCTGCTGTGCAGTTTGTGGTAAAAGCAGGTGATCCAAAGGTCCAACATATAGCTGTGAATGATTGGTACCGATTACGGCGTAGTCTAGAGATTGTTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGATTCTAGAGTTGCTGAAGGTTCTGATTCATCTGATACAAAATCTAATTGTGCTGCATTGAAAGAGACTGATTCAGCAAAATTAGACTACGATTTCATGTGTTTTTTCCTTTCAAGCGACAGACTTGACCTCTACAAATTACTCGATTATCGGTGTGAAGATATGTTACTAGGAGGGAATAGCATCTTGTCTGAGGCTCAATGGCTTCTTGATACCGGTCTTCAACCGAACTCCAACTCTGCAACAAAAGCAATTGGTTACAGACAAGCCACGGAGTACTTACTTGGATGCAGACAACAGGGAGGTGAGAGTTCAGCCAGAGAATTTTACAGATTTTTGTCTGAATTTCAAAAAGCATCTCGGAATTTTGCGAAACGACAGTTGACTTGGTTTCGAAATGAGCGTATATACCATTGGCTTGATGCTTCTAAACCTCTGGAAACCGTTCTCAACTTCATTCATGATGCATACCATGATCAGAATGGAAGTCTTTTTGTGCCCGAACACCTTAGAATGTCGAAAGATATTTCTAATTCCCGAATAGCTGCTAAACTAAAGACTTACCGCACCAGAAATAGGCATTTTGTGAACGGGGAAGATTGTTATCCTATTTTAGAATGGATAAAGACGACCCAAAAGTGA 1350 0.4348 MITNGVCSLRPCLRLPEHQIFRAAPLSYHFRRRFLVTASLSEKNKEKVIVISGPTGSGKSRLAMELARRLNGEIVSADSVQVYRGLDIGSAKPSLNDRKEVPHHLVDILHPCEDYSVGQFFEDARQATRSILDKGRIPIVVGGTGLYLRWFIYGKPDVPKSSTEITSQVSKELAEFQRNDDWDAAVQFVVKAGDPKVQHIAVNDWYRLRRSLEIVKSSGSPPSAFRVPYDSFREQGDSRVAEGSDSSDTKSNCAALKETDSAKLDYDFMCFFLSSDRLDLYKLLDYRCEDMLLGGNSILSEAQWLLDTGLQPNSNSATKAIGYRQATEYLLGCRQQGGESSAREFYRFLSEFQKASRNFAKRQLTWFRNERIYHWLDASKPLETVLNFIHDAYHDQNGSLFVPEHLRMSKDISNSRIAAKLKTYRTRNRHFVNGEDCYPILEWIKTTQK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03157 449 Gene3D - 156 227 - -
Vifa1g03157 449 Gene3D - 45 424 IPR027417 -
Vifa1g03157 449 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 45 381 IPR039657 -
Vifa1g03157 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 177 IPR027417 -
Vifa1g03157 449 Pfam IPP transferase 81 370 - -
Vifa1g03157 449 FunFam tRNA dimethylallyltransferase 9 156 227 - -
Vifa1g03157 449 Hamap tRNA dimethylallyltransferase [miaA]. 48 387 IPR018022 GO:0008033
Vifa1g03157 449 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 48 225 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03157 Vifa-Chr1 494106397 494120025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03157 51 349 C2H2 Transcription Factor Family AT2G27760 25.325 2.46e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03157 K00791 - gmx:100808814 706.057