Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03148 ATGGATTTCTTCTCGGAATATGGTGATGCCAACCGGTATAAAATTCAAGAAGTAATTGGCAAAGGTAGTTACGGTGTTGTTTGTTCAGCCGTTGACACTCACACGGGTGAAAAGGTTGCAATAAAAAAGGTTCATGGTATCTTTGAGCATATATCTGATGCTGCGCGTATTCTTCGTGAGATAAAGCTTCTCAGACTTCTTCGACATCCCGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCAAGCAGGGATTTCAAAGATATTTATGTTGTTTTTGAACTCTTGGAGTCTGATCTGCATCAAGTCATTAGAGCCAATGCCAACTTAACGAAAGAGCACTATCAGTTTTTTCTTTACCAATTACTTCGAGCTTTGAAGTATATTCACACCGCAAATGTGTATCATCGAGACTTGAAGCCGAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGTGACACTCCAACAACTGTATTTTGGACGGATTATGTTGCGACAAGATGGTATCGAGCACCAGAGCTCTGTGGATCATTTTACTCAAAGTATACTCCGGCAATTGATATTTGGAGTATCGGATGCATCTTTGCCGAAGTATTAATAGGAAAACCCCTTTTTCCTGGAAAAAGTGTTGTCCATCAGTTGGATCTAATCACGGATTTGCTTGGGACCCCGTCACTCGATGCTATATCTCGGGTACGCAATGATAAAGCAAGGAGATACCTAACTAGTATGAGGAAAAAGCAGCCTGTACCATTTGCACAAAAATTTCCTAATGCCGATCCTTTATCACTACGACTACTCGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTCATCCTTACTTTGAGGGACTGGCAAAAATTGAAAGGGAACCATCCTGCCAGCCAATTACACAAATGGAGTTTGAATTTGAAAAGAGAAGAGTATCAAAGGGAGAGATTCGAGATTTAATTTTCCTTGAGATTCTCGAGTACCACCCTCAACTAAATGGAAGAGAGAAGACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCAAAAATCAGTTCACTCATCTCGAGGAAACTGGTGGTAAAAGTGATCCAGTTGTGCCACTTGAAAGAAAAACATGCATCACCTTCCCAGGTCCACGACTCAACATTCAGGGACTGAAAATAATTCCACTGGAAACTCCTGGTAAAGCTGTTAGACCGCGTTGTTCGGACGTCAATGAGAGGCAAACCATATCCAGCATTGTTGAATCAAAACCGAAATAG 1323 0.4082 MDFFSEYGDANRYKIQEVIGKGSYGVVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSSRDFKDIYVVFELLESDLHQVIRANANLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLIGKPLFPGKSVVHQLDLITDLLGTPSLDAISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPLSLRLLERLLAFDPKDRPTAEEALAHPYFEGLAKIEREPSCQPITQMEFEFEKRRVSKGEIRDLIFLEILEYHPQLNGREKTNFLYPSAVDQFKNQFTHLEETGGKSDPVVPLERKTCITFPGPRLNIQGLKIIPLETPGKAVRPRCSDVNERQTISSIVESKPK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03148 440 Gene3D Phosphorylase Kinase; domain 1 28 350 - -
Vifa1g03148 440 Gene3D Transferase(Phosphotransferase) domain 1 99 327 - -
Vifa1g03148 440 SMART serkin_6 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03148 440 FunFam Mitogen-activated protein kinase 3 107 - -
Vifa1g03148 440 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Vifa1g03148 440 FunFam Mitogen-activated protein kinase 99 327 - -
Vifa1g03148 440 Pfam Protein kinase domain 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03148 440 ProSiteProfiles Protein kinase domain profile. 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03148 440 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 327 - -
Vifa1g03148 440 CDD STKc_TDY_MAPK 12 349 - -
Vifa1g03148 440 ProSitePatterns MAP kinase signature. 48 151 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa1g03148 440 Coils Coil 94 114 - -
Vifa1g03148 440 ProSitePatterns Protein kinases ATP-binding region signature. 19 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03148 Vifa-Chr1 492505863 492508625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03148 1 391 MAP Kinase Gene Family AT2G42880 86.364 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g03148 Pkinase 2.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03148 - - tpra:123882256 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10025 1 1653198670 1653202397 Vifa1g03148 1 492505863 492508625 PCT