Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03135 ATGAATGGCGGTGAGATAGTGGAAGTTGACGGCGGTCACATTATACGGTCACGAGGAAGAAAAGACCGTCACAGTAAAGTTTGCACCGCGAAAGGCCCACGAGACCGCCGGGTACGGTTATCGGCCCACACCGCTATTGAATTCTACGACGTTCAAGATCGGTTGGGCTTTGACCGGCCCAGTAAAGCCCTTGACTGGCTCATTAATAAAGCCAAGCCCGCCATCGATCAACTCGCGCAACTTCCTCCATGGAAACCCACTCTTGTTAGTACTAAACAGCAACAAAACGACGACGTAGAAGAGAAAGAAAACGCTAATGAAAACGAGTTTCGTTTTCTTCAGAACTTTAATGGTAACAACAATAGCAACACTTTCATTCCGTTTGAAACTGAAACGACGTCGCCGATTCAGTTTCAGAGTTATAATAATAGCACTCCTGATTTGCTTTCGAGAACGGATAGTAATGATTTGCGTCTTTCGCTTCAACAGAATCGGAATCAGAATGTTCTATTTGCCGGAAACTTTGATGGAATTCCGGTAGCTTGGAATTCTGGTTGTGGCGGTGGCAGTGGTGGTGGTGCTACTATTGATACTGGTAGTAATCATAATCATAGTCGCGATGATGATGCTTCAGGTGGAGGTTTTGTGTTTCGTACTCCTTCGCCTTCTCCGGCGGTGATGTATGGTCAGAATCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACAGTCCTTCAGTTCGTGCTTGGATAGATGCGCCCACGTTTGTTGCTGCTGATTATCGACGTCAGACGGCTGCTACGGGTGCGTTTGGTGCCGGATTTTCTTCTGGTAGCTTTTCTGGTTTCCGTGTGCCGGCACGAATTGGAGGTGATGATGAGGAGGTGCATGGCAACAGGCCATCGTCTGCTTCCTCTGATTCTCGCCGTTGA 936 0.4797 MNGGEIVEVDGGHIIRSRGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLAQLPPWKPTLVSTKQQQNDDVEEKENANENEFRFLQNFNGNNNSNTFIPFETETTSPIQFQSYNNSTPDLLSRTDSNDLRLSLQQNRNQNVLFAGNFDGIPVAWNSGCGGGSGGGATIDTGSNHNHSRDDDASGGGFVFRTPSPSPAVMYGQNQYLSQRGPLQSSYSPSVRAWIDAPTFVAADYRRQTAATGAFGAGFSSGSFSGFRVPARIGGDDEEVHGNRPSSASSDSRR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03135 311 MobiDBLite consensus disorder prediction 287 311 - -
Vifa1g03135 311 Pfam TCP family transcription factor 19 122 IPR017887 -
Vifa1g03135 311 Coils Coil 89 109 - -
Vifa1g03135 311 ProSiteProfiles TCP domain profile. 20 78 IPR017887 -
Vifa1g03135 311 MobiDBLite consensus disorder prediction 193 222 - -
Vifa1g03135 311 MobiDBLite consensus disorder prediction 289 311 - -
Vifa1g03135 311 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g03135 311 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 241 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03135 Vifa-Chr1 491014545 491015480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03135 4 311 TCP Transcription Factor Family AT1G53230 43.681 8.48e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa1g03135 TCP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03135 - - tpra:123895106 427.557