Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03127 ATGTTTGGTGAAATGGAACACAAGCAAGAACAAGACAGTGGTAACCAGAATAATATGTCTGGTAATGGTATTGATGTTAGTTTAGTATCTCCTAAAGTTCCGAAATCGGTTTCGCCAGTTTCTTCTGCAGCCGAGGGGGAAACATTAAAGCGACCTCGTGGTCGGCCGGCTGGATCGAAAAACAAGCCAAAGCCGCCGATTATTGTCACGAGAGATAGTGCTAATGCACTGAAAGCTCATGCTATGGAAGTGAGTTCTGGCTGTGATGTGAATGAGAGTTTGTTAAACTTTGCGAGGAGGAAGCAACGAGGTCTTTGTATACTTAATGGCACTGGTTGTGTAACGAATGTAACATTGCGTCAACCAGCTTCTTCTGGTGCAATTGTGACCCTTCATGGTCGATTTGAGATTCTCTCGTTGTTGGGGTCGATTCTTCCCCCACCAGCACCGCCGGGAATCACTGGCTTGACGATTTACTTAGCAGGTGCTCAAGGACAAGTTGTTGGAGGTGCTGTAGTCGGTGCTTTGATTGCTTCGGGACCTGTTGTCATCATGGCTGCTTCCTTCATGCATGCTACTTTTGATCGTCTTCCAGCGGAAGACGACGAACTTGCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGTGCACAACATCATCTTGATATCTCTGACTTATATGCAATGCCACAGAACCTCCTCATGAATGGTGCAATGCCTCCTGAGATATACTCTTGGGCACCAGGGCGAAACTTGTCAAAAACCTGA 771 0.4643 MFGEMEHKQEQDSGNQNNMSGNGIDVSLVSPKVPKSVSPVSSAAEGETLKRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATFDRLPAEDDELAAAMQNQHYQNGRAQHHLDISDLYAMPQNLLMNGAMPPEIYSWAPGRNLSKT 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03127 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 13 219 IPR014476 GO:0003680
Vifa1g03127 256 MobiDBLite consensus disorder prediction 1 68 - -
Vifa1g03127 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 189 IPR005175 -
Vifa1g03127 256 CDD DUF296 80 160 IPR005175 -
Vifa1g03127 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 206 - -
Vifa1g03127 256 PIRSF ESCAROLA 2 250 IPR014476 GO:0003680
Vifa1g03127 256 Gene3D - 76 221 - -
Vifa1g03127 256 ProSiteProfiles PPC domain profile profile. 74 212 IPR005175 -
Vifa1g03127 256 FunFam AT-hook motif nuclear-localized protein 77 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03127 Vifa-Chr1 490737401 490738171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03127 5 255 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 67.984 6.99e-104 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03127 - - gmx:100804941 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03127 1 490737401 490738171 Vifa1g03127 1 490737401 490738171 ECH