Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03125 ATGCAAGAGCCTCTCCTCACTCTTTTCTCCACTAATGGAGAAACACATTCACCAAGTATACCATTACTCAAGGAACAATCTTTCCATGATCTTGCTCCATCCCCATCATTTCATCAATCATCTTCTCATATCATCAATGAAGCCAGACACCCTTCTTTTATTAACCTCATAGCCAACTTGAGCATCGCGAAGGCAAAGATCATTCACCGATCTCGTTCTGCTCCGTCTATTTTATTCACAAACATGAAGGTAGATTTTCACGAGCCCTTTGAAAACAGACCTGCATATAACTCATCAACTTTACTCGTGAGGCTGTGTTTCATTATTGTTTTATTGTATTTGGCTGTTGGTGTAACGGTGTACATGATAAGCGGGAGTTTCAAGGGAACTACTACATTCAGACCTGTAGATGCTGTGTATTTTACAGTGGTAACTCTATCCACTATTGGATACGGAGATATTGTTCCTGATACAATATTTACTAAGATGTTTACATGTGGTTTCATTTTGGTTGGTTTTGGATTCATTGGTTTTATGCTTAGTGAGTTAGTTGTATACATTTGTGATACACACGAAGCGTTCTTATTGAGCATGATGGATGAGAATAGATACAAGAAAATTCTAAGGACTTACATGGTTAATGAAGAGAAAGGAAGAATGAGGATAAGAACGAAAGTTTGTGTTGCTTCTGTTGTTGTTATCGTCTGCATTGCTATTGGAACGATTACAGCACATTTTGTTGAGGATCTGAATTGGGCAGACAGTTTTTATCTTTCAATTACTTCTGTAACAACGGTTGGCTATGGAGATTTTTCTTTCAAAACTTTAGCCGGAAGGTGTTTCGCGATTCTTTGGCTTTTGGTAAGCACGTTGGCAGTTGCGAGGGCGTTTTTGTACCTCGCTGATTATAGTATGCAAAAGAGAAGCCGCGAGATGGCAAAAAGGGTTCTTCAAAAGAAGATAACTTTGTCAGATTTGGCAGCTGCAGATCTTGATAATGATGGATCAATCAGTAAATCTGATTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCAACGAATTAGCAAACAATTTGATTCGTTGGACCATGGCATGTATGGAAAGATCACTCTAGCTGGTCTCATGGAAACGGTCTAG 1158 0.3869 MQEPLLTLFSTNGETHSPSIPLLKEQSFHDLAPSPSFHQSSSHIINEARHPSFINLIANLSIAKAKIIHRSRSAPSILFTNMKVDFHEPFENRPAYNSSTLLVRLCFIIVLLYLAVGVTVYMISGSFKGTTTFRPVDAVYFTVVTLSTIGYGDIVPDTIFTKMFTCGFILVGFGFIGFMLSELVVYICDTHEAFLLSMMDENRYKKILRTYMVNEEKGRMRIRTKVCVASVVVIVCIAIGTITAHFVEDLNWADSFYLSITSVTTVGYGDFSFKTLAGRCFAILWLLVSTLAVARAFLYLADYSMQKRSREMAKRVLQKKITLSDLAAADLDNDGSISKSDFVIYKLKQMGKITEIDIQRISKQFDSLDHGMYGKITLAGLMETV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03125 385 SUPERFAMILY Voltage-gated potassium channels 98 187 - -
Vifa1g03125 385 SUPERFAMILY Voltage-gated potassium channels 199 320 - -
Vifa1g03125 385 Gene3D - 188 329 - -
Vifa1g03125 385 FunFam Two-pore potassium channel 2-like 204 328 - -
Vifa1g03125 385 PRINTS Two pore domain K+ channel signature 144 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03125 385 PRINTS Two pore domain K+ channel signature 264 273 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03125 385 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 99 156 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03125 385 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Vifa1g03125 385 Gene3D - 91 187 - -
Vifa1g03125 385 Pfam Ion channel 108 185 IPR013099 -
Vifa1g03125 385 Pfam Ion channel 232 303 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03125 Vifa-Chr1 490731660 490732945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03125 61 383 Ion Channels AT4G18160 48.765 9.32e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03125 K05389 - gmx:100789639 516.153