Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03122 ATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCATCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCCGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTTAA 1188 0.4158 MDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTATSIHWTKEYQKAVLDIIRARKV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03122 395 SUPERFAMILY Ankyrin repeat 149 378 IPR036770 -
Vifa1g03122 395 SMART ANK_2a 299 328 IPR002110 GO:0005515
Vifa1g03122 395 SMART ANK_2a 332 361 IPR002110 GO:0005515
Vifa1g03122 395 SMART ANK_2a 174 203 IPR002110 GO:0005515
Vifa1g03122 395 SMART ANK_2a 261 290 IPR002110 GO:0005515
Vifa1g03122 395 CDD RING_CH-C4HC3_MARCH 46 94 - -
Vifa1g03122 395 Gene3D - 131 290 IPR036770 -
Vifa1g03122 395 ProSiteProfiles Ankyrin repeat profile. 332 364 IPR002110 GO:0005515
Vifa1g03122 395 PANTHER OS02G0165000 PROTEIN 3 151 - -
Vifa1g03122 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 101 IPR013083 -
Vifa1g03122 395 SMART ringv_2 45 94 IPR011016 GO:0008270
Vifa1g03122 395 Gene3D - 291 387 IPR036770 -
Vifa1g03122 395 Pfam Ankyrin repeats (3 copies) 279 361 IPR002110 GO:0005515
Vifa1g03122 395 Pfam RING-variant domain 46 93 IPR011016 GO:0008270
Vifa1g03122 395 SUPERFAMILY RING/U-box 42 97 - -
Vifa1g03122 395 ProSiteProfiles Zinc finger RING-CH-type profile. 38 100 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03122 Vifa-Chr1 490591194 490593135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03122 34 100 C3H Transcription Factor Family AT2G37950 42.647 4.43e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03122 - - mtr:11444172 410.609