Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03113 ATGGTTAGGAAGAGGAGAACCCAATTACCTGGTGGTGAAAGCTCAGATGGTCAACAACACCCTGCTCAGGGGAGTGTTCCCCCTCAACAACAGGCTGCAGGACCCCATGGAGGGGGAGGACCCCAAGGAGGGAGAGGCTGGGCTCCCCAAGGTGGACGTGAGGATTATGGAGGTGGGCGCGGTGGTCGTGGGATGCCCCAACAACAATATGGTGCCCCTCCTGAGTATCAAGGTAGAGGTAGAGGAGGACAGCCACAGCCCCAACAGCAATATGGTGCCCCTCCTGAGTATCAAGGAAGGGGTAGGGGAGGACCTCCCCAGCCCCAACAGCAGTATGGTGGCCCACCTGAGTATCAAGGTAGAGGCAGGGGAGCGCCTTCTCAGCAAGGAGGTCGTGGATATGGCGGTGGCCGAGGATACGGTGGTGGCCATGATACAGTTCCTTCTTATGGAGGCCCCCCTAGGCCACAAGCACCCGAGCTGCACCAAGCTTCCTCAGTTCCTTCTGTGCCATATCCAGCTGCGGTGTCTCCTTCACCTGCACCGAGTGAGGCAAGTTCATCTTTGCATCCACCAGAAGTATCTGAAGTGGAACAGGATCTGGGACAGATGACAATTCATTCCGAAGAGACTCCCACTCCTCTGCCTGCAAGTAAATCATCAGTGAGGTTTCCCCTTCGACCTGGAAAAGGGAAATTAGGCAAGAAATGTGTTGTTAAGGCGAACCACTTCTTTGCCGAGTTGCCAGATAAAGACCTGCATCAGTATGATGTGACAATTACTCCTGAAGTTACTTCTAGAGGTGTGAACCGTGCTGTTATCGCGGAGCTTGTGAGATTGTATTGGGATTCTCACTTGGGAAAGAGACTTCCGGCTTATGATGGCCGTAAGAGCCTCTATACTGCTGGGCCACTTCCTTTTATTTCAAAGGACTTTAGAATCACCCTGGTTGATGAAGCTGATGGGTCAGGAGGGAAGAGGAGGGACAGGGAGTTTAAAGTTATTATTAAACTTGCTTCACGTGTTGACCTTCACCACCTGGGTCTCTTTTTGGAGGGGAGACAAACTGATGCACCTCAGGAAGCTCTGCAGGTTCTTGACATTGTTCTCCGGGAGCTTCCTACTTCCAGGTATTGTCCAGTGGGAAGATCATTTTATTCCCCTCATCTAGGTAGAAGGCAGCCTTTAGGTGATGGGTTGGAAACTTGGCGAGGATTTTATCAAAGTATTCGGCCTACTCAAATGGGACTGTCTCTGAACATTGATATGTCTTCAACTGCATTTTTTGAGCCACTGCCTGTGATAGAGTTCGTTTGCCAGTTGCTGAATAGGGAAGTCTCATCCAGGCCTCTGGCTGATGCTGATCGGGTCAAGATAAAAAAAGCCCTTCGTGGTATTAAAGTTGAAGTAACACATCGTGGCAACATGAAGAGAAAATATCGTATTGCTGGTTTAACATCACAAGCTACCAGAGAGCTGACATTCCCTGTGGATGAGAGGGGGACTTTGAAGTCTGTTGTTGAGTATTTCTTTGAGACATATGGTTTTGTCATTCAACATGCTCAGTTGCCTTGTTTGCAAGTGGGCAACCCTCAAAGACCAAACTACCTTCCAATGGAGGTCTGCAAAATTGCCGAGGGGCAAAGGTACTCAAAACGATTGAATGAGCGACAAATTACCGCCCTGCTCAAAGTCACATGCCAACGTCCACTAGATAGGGAACGTGACATCTCGCAGACAGTACATCATAATGCCTATCATGAAGATCCTTATGCTAAAGAGTTTGGTATCAAAATCAGTGATAAGCTCGCTCAAGTCGAAGCTCGCATCCTTCCTGCGCCATGGCTCAAATATCATGATACGGGCCGCGAAAAGGATTGTCTACCCCAAGTTGGACAATGGAATATGATGAATAAGAAAATGGTCGATGGGGGAGTAGTTAACAATTGGTTCTGCGTAAACTTTTCTAGGAGTGTGCAAGAGAGTACTGCACGTGGCTTTTGTAGTGAACTTGCCCGGATGTGTCAAATATCTGGCATGGAGTTTAATCCTGAACCAGTAGTTCCTCTACATAGTGGTCGTCCTGACCAAGTAGAGAAGGTTCTCCAAATGCGTTATCATGATGTCAAGACCAAGCTGCAGGGAAAGGAGCCCGAATTGCTCATTGTCATTTTGCCTGATAATAATGGTTCTCTTTATGGTGACCTCAAGCGTATTTGTGAGACTGACCTGGGGATTGTTTCCCAGTGTTGTTTGACTAAAAATGTTTTTAAGTTGAACAAGCAGTACCTTGCTAATGTTTCATTGAAAATTAATGTTAAAGTTGGGGGTAGGAATACCGTGCTTGTTGATGCACTTTCACGACGCATTCCTCTAGTCGGTGACAGACCTACTATAATTTTTGGAGCTGATGTGACTCATCCTCACCCTGGCGAGGATTCAAGTCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCAGAAATCACCAAATATGCTGGTTTGGTTTGTGCCCAAGCACATCGGCAAGAATTAATTCAAGACCTTTTCAAACAATGGGAAGATCCAGTCAGAGGAACATTGACCGGTGGAATGATCAAGGAACTTCTTATATCATTCCGGAGAGCAACTGGTCAAAAACCGCAGCGCATCATATTTTACAGAGATGGAGTCAGCGAAGGCCAATTTTACCAAGTCCTGCTATTTGAGCTTGATGCAATCCGGAAGGCTTGTGCTTCACTTGAACCCAACTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAACGTCATCATACTAGGCTCTTTGCCAATGACCACCGTGACAAGAATTCTGTTGATCGCAGTGGCAATATATTACCTGGAACTGTTGTGGATTCTAAGATCTGCCATCCGACTGAGTTTGACTTTTATCTTTGCAGTCATGCCGGAATACAGGGTACTAGCCGTCCAGCTCATTATCATGTTTTGTGGGATGAAAATAATTTTACTGCTGATGCTTTGCAAACTCTAAGTAATAACTTGTGCTACACATATGCCAGATGCACCCGTTCTGTTTCAATCGTGCCCCCTGCTTATTATGCTCATTTGGCTGCATTCCGGGCAAGGTTTTATATGGAACCTGAGACTTCTGATAGCGGATCTATGGCAAGCGGAGCAGTTTCTCGTGGTGGAATGGCAGCTGCCGCTGGGCGTAGTTCACGTGCGCCGGGTGCAAGTGCTGCTGTTAGACCCCTGCCTGCATTGAAGGAGAATGTCAAGAGGGTCATGTTTTATTGCTGA 3285 0.4737 MVRKRRTQLPGGESSDGQQHPAQGSVPPQQQAAGPHGGGGPQGGRGWAPQGGREDYGGGRGGRGMPQQQYGAPPEYQGRGRGGQPQPQQQYGAPPEYQGRGRGGPPQPQQQYGGPPEYQGRGRGAPSQQGGRGYGGGRGYGGGHDTVPSYGGPPRPQAPELHQASSVPSVPYPAAVSPSPAPSEASSSLHPPEVSEVEQDLGQMTIHSEETPTPLPASKSSVRFPLRPGKGKLGKKCVVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVIAELVRLYWDSHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDEADGSGGKRRDREFKVIIKLASRVDLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPHLGRRQPLGDGLETWRGFYQSIRPTQMGLSLNIDMSSTAFFEPLPVIEFVCQLLNREVSSRPLADADRVKIKKALRGIKVEVTHRGNMKRKYRIAGLTSQATRELTFPVDERGTLKSVVEYFFETYGFVIQHAQLPCLQVGNPQRPNYLPMEVCKIAEGQRYSKRLNERQITALLKVTCQRPLDRERDISQTVHHNAYHEDPYAKEFGIKISDKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVDGGVVNNWFCVNFSRSVQESTARGFCSELARMCQISGMEFNPEPVVPLHSGRPDQVEKVLQMRYHDVKTKLQGKEPELLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKNVFKLNKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWEDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANDHRDKNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLSNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAVSRGGMAAAAGRSSRAPGASAAVRPLPALKENVKRVMFYC 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03113 1094 Gene3D - 610 783 - -
Vifa1g03113 1094 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 214 1042 - -
Vifa1g03113 1094 CDD Piwi_ago-like 590 1040 IPR045246 -
Vifa1g03113 1094 SMART Piwi_a_2 720 1041 IPR003165 GO:0003676
Vifa1g03113 1094 Pfam Argonaute linker 1 domain 380 429 IPR014811 -
Vifa1g03113 1094 FunFam Argonaute 10 610 783 - -
Vifa1g03113 1094 MobiDBLite consensus disorder prediction 11 30 - -
Vifa1g03113 1094 FunFam protein argonaute 10-like 789 1094 - -
Vifa1g03113 1094 Pfam N-terminal domain of argonaute 235 370 IPR032474 -
Vifa1g03113 1094 SMART PAZ_2_a_3 436 568 IPR003100 GO:0005515
Vifa1g03113 1094 ProSiteProfiles Piwi domain profile. 720 1041 IPR003165 GO:0003676
Vifa1g03113 1094 Pfam Glycine-rich region of argonaut 113 212 IPR024357 -
Vifa1g03113 1094 Pfam Mid domain of argonaute 629 703 IPR032473 -
Vifa1g03113 1094 Gene3D paz domain 425 550 - -
Vifa1g03113 1094 CDD PAZ_argonaute_like 431 545 - -
Vifa1g03113 1094 Pfam Argonaute linker 2 domain 572 618 IPR032472 -
Vifa1g03113 1094 MobiDBLite consensus disorder prediction 1 199 - -
Vifa1g03113 1094 SUPERFAMILY PAZ domain 238 584 IPR036085 GO:0005515
Vifa1g03113 1094 ProSiteProfiles PAZ domain profile. 432 546 IPR003100 GO:0005515
Vifa1g03113 1094 Pfam Piwi domain 721 1040 IPR003165 GO:0003676
Vifa1g03113 1094 Pfam PAZ domain 455 561 IPR003100 GO:0005515
Vifa1g03113 1094 Gene3D - 789 1094 IPR036397 GO:0003676
Vifa1g03113 1094 FunFam Protein argonaute-2 425 551 - -
Vifa1g03113 1094 SUPERFAMILY Ribonuclease H-like 709 1041 IPR012337 -
Vifa1g03113 1094 SMART DUF1785_2 379 431 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03113 Vifa-Chr1 489530133 489536100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03113 117 1094 Eukaryotic Initiation Factors Gene Family AT1G48410 78.354 0.0 1574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03113 K11593 - gmx:100780375 1693.32