Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03110 ATGGCGAAAACGAGGCCTGGAAAAAAAGACATGGACTCATACACCATCAGAGGAACCAACAAGCTTGTTAAAGCTGGTGATTGTGTTTTGATGCGTCCTTCTGACACGAGTAAGCCACCATACGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAGCAATGTGAGGGTTCGTGTGAGATGGTATTATAGACCTGAAGAATCTCTTGGTGGAAGAAGACAGTTTCATGGAGCAAAGGAACTGTTTTTATCTGACCATTTTGATGTTCAAAGTGCTCATACTATTGAAGGGAAGTGTATTGTTCATTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTGCTGAAGATTATTATTGTAGGTTTGAGTATAAGGCTGCTACTGGTGCTTTCACCCCCGACCGTGTCGCTGTATACTGCAAATGTGAGATGCCTTATAATCCGGATGACCTAATGGTGCAGTGTGAGGGGTGCAAAGATTGGTACCATCCGGCTTGTGTGGGCATGACTATTGAAGAAGCGAAGAAGTTGGATCATTTTGTTTGTTATGAATGTTCATCTGATGATGATATGAAGAAACCACTGGCGCCATTTCCTGCATCACCGGGATCTGATGGCAAGGTGGAGCCAAAGCGGCGAAAGAGAGGACCAGGACCGTGA 663 0.4449 MAKTRPGKKDMDSYTIRGTNKLVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCYECSSDDDMKKPLAPFPASPGSDGKVEPKRRKRGPGP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03110 220 FunFam Chromatin remodeling protein EBS 1 132 - -
Vifa1g03110 220 SMART PHD_3 140 187 IPR001965 -
Vifa1g03110 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 197 IPR013083 -
Vifa1g03110 220 Gene3D - 2 132 IPR043151 -
Vifa1g03110 220 CDD BAH_BAHCC1 26 156 - -
Vifa1g03110 220 MobiDBLite consensus disorder prediction 190 220 - -
Vifa1g03110 220 PANTHER OS08G0421900 PROTEIN 1 208 - -
Vifa1g03110 220 SMART BAH_4 21 136 IPR001025 GO:0003682
Vifa1g03110 220 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vifa1g03110 220 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Vifa1g03110 220 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vifa1g03110 220 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vifa1g03110 220 Pfam PHD-finger 140 188 IPR019787 -
Vifa1g03110 220 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Vifa1g03110 220 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03110 Vifa-Chr1 488338395 488340491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03110 31 132 Core DNA Replication Machinery Family AT4G14700 30.097 2.45e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g03110 BAH 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03110 K25868 - gmx:100800993 443.351