Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03108 ATGGCTAATGAAAATCATGATCCATTCTATCATCACACCCACCACCATGATGATGATGAACTCAATCACTCTAACTTTTCATTCTCACAAAACTTTCAAGCCTTTGATCATCCTTCTTCTCATACTACATCTTTCACTGACTACTTACATGGTTCTATGGACTATAACACTCTCTCAAAAGCCTTTGACTTGTCTTGTTCATCATCTGAAATACTTTCTTCCATTAACGATAATAACATGAAGAAATCTAGTGCTGGAGATTCTGAATCATCTTCATCTAACGAAGCTGAAGCTCTCATAGAACTAGACTCAGCTAAAATGGAAAAGAAAGATAAGTATCCAAAATTAGGGTCTGGAGATGGAGATGAAAATTCTAAGAAAGAGAACAAGGTTAAAAAGAAAGAGAAAAAACCAAAAGAACCAAGGTTTGCATTCTTGACTAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAAAAAGCAGTCAAGAATAGTCCGTACCCAAGGAGCTACTATAGATGCACAAGTCAAAAGTGTATAGTGAAGAAAAGAGTTGAAAGATCATACCAAGATCCATCAATTGTGATGACAACATATGAAGGACAACACAACCATCATTGTCCAGCAACACTTAGAGGCAATGCAGCTTCCAACATCTTTTCATCACCATCTCTCTTTGGTTCCAACTCAATTAGATTGGAGCAAAGAATACACCAAGATTTCCTTGCTCAGTTTCTTCCTAGTTATAGCCAAAGTAGTAATCATCAAATGTTCCACCAAAATGTTTCTCTACAGGCTCATCAGCATCAGCAGCAGCAACAACAACAGCAACAACATCAGCAACATCAACAACATCAGCAACATCAACAACAGTTTCAACTCCATCACGACAATGGTTTGTTGCAAGATCTACTACCATCATCATTTCCAGGAAAGCAAGAGCAATGA 966 0.3716 MANENHDPFYHHTHHHDDDELNHSNFSFSQNFQAFDHPSSHTTSFTDYLHGSMDYNTLSKAFDLSCSSSEILSSINDNNMKKSSAGDSESSSSNEAEALIELDSAKMEKKDKYPKLGSGDGDENSKKENKVKKKEKKPKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNAASNIFSSPSLFGSNSIRLEQRIHQDFLAQFLPSYSQSSNHQMFHQNVSLQAHQHQQQQQQQQQHQQHQQHQQHQQQFQLHHDNGLLQDLLPSSFPGKQEQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03108 321 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03108 321 MobiDBLite consensus disorder prediction 269 303 - -
Vifa1g03108 321 FunFam WRKY transcription factor 57 140 214 - -
Vifa1g03108 321 MobiDBLite consensus disorder prediction 77 96 - -
Vifa1g03108 321 MobiDBLite consensus disorder prediction 109 139 - -
Vifa1g03108 321 Gene3D WRKY domain 139 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03108 321 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03108 321 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03108 321 MobiDBLite consensus disorder prediction 269 321 - -
Vifa1g03108 321 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03108 321 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 291 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03108 Vifa-Chr1 487863312 487865142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03108 1 267 WRKY Transcription Factor Family AT4G18170 42.434 7.97e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g03108 WRKY 6.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03108 - - aprc:113847247 331.643