Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03107 ATGTCACCAAATAATTCGTTGAATGTTGAATTATCAAAGAAAACAGTTTTGGGTTTGAAAAGATGGGTTTTGATTGGGATAGGTGTTGGAGCATTTATTGTGGTGATTCTTTGTATATTGTCTATATGGGTGATGTTTCGGAGGAAGTCTAAGAGTAGGAGATCTCTCGACAAGCCCCAAATACCGAATGTGTCAAAAGATATCAATGTTGACATTGTTGGGGTGCAGAATTCTCATGTTCAACATGGAAACATGTTTGTTCCTAATGATAGTAATTTGGAGAAGATATCGGTTCGTATGAGGACGGGTAAATTCAGTGATCCTGATAGTGTCAGTCAATGCAGCTCAGTTTATCATCACGAGAGAGGATTAAGTTCACTGTCATGGGAAGAAGGGAGCTCCGGGAATTTTAAGAAGCGATCTACATTGTCATATGGAGGAGGGCCAACGACCACCTCTCCTTTGATTGGCTTGCCGGAATTTTCTCATCTTGGGTGGGGTCATTGGTTTACACTTAGAGATCTTGAACAAGCAACTCATTATTTCTCGGCCGAGAACATTCTCGGCGAGGGTGGATATGGAGTTGTTTACAAGGGCAGGCTGATCAATGGAACCGATGTTGCCGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAGAGAATTCCGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTTGTGCGCCTACTTGGATATTGCGTAGAAGGAGTTCACAGGCTACTGGTGTATGAATATGTGAACAACGGTAACTTAGAACAGTGGTTACATGGCGACAAATACCAACTCGGAACACTTACTTGGGAGGCGCGCGTGAAAGTTATTCTCGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCGAAAGTTATTCACCGAGATATAAAGTCCAGCAATATATTGATCGACAAAGAGTTCAATGCGAAAGTTTCCGATTTTGGTTTGGCCAAACTCTTGGAATCAGGAGAAAGTTACATAACTACTCGAGTAATGGGAACATTTGGCTATGTAGCACCAGAATATGCCAATAGCGGTTTGTTAAACGAGAAGAGTGATATTTACAGCTTTGGTGTCCTCCTGCTTGAAGCCGTTACTGGAAGGGACCCTGTAGATTATTCGCGTCCTTCTGATGAGGTTAATCTTGTTGAGTGGCTCAAGATGATGGTGGGAGCAAGGAGAGCCGAGGAAGTTGTGGACTCGAGACTCGAAGTTAAACCATCTGCACGCGCTTTAAAGCGTTCTCTTCTGGTTGCTCTTAGATGTATTGATCCTGATGCAGAAAAAAGGCCCAAAATGAGTCATGTTGTAAGGATGCTTGAAGCCGACGAATATCCATATCGAGAGGATCGAAGAAATAGAAAGAGCGCGACTACCACCAGCTTGGAAATTGAAACAGTCAATGATATTTCCGGTCCATCTGATGCTGAAAAGGCTGTACATTCAAAGAGCCATGCGCCCGAAGAAGCTGCTGAAAAGGCGGTACATTCAAAGAGCCATGCGCCTGAAACATCTTGA 1557 0.4348 MSPNNSLNVELSKKTVLGLKRWVLIGIGVGAFIVVILCILSIWVMFRRKSKSRRSLDKPQIPNVSKDINVDIVGVQNSHVQHGNMFVPNDSNLEKISVRMRTGKFSDPDSVSQCSSVYHHERGLSSLSWEEGSSGNFKKRSTLSYGGGPTTTSPLIGLPEFSHLGWGHWFTLRDLEQATHYFSAENILGEGGYGVVYKGRLINGTDVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYQLGTLTWEARVKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDKEFNAKVSDFGLAKLLESGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYSRPSDEVNLVEWLKMMVGARRAEEVVDSRLEVKPSARALKRSLLVALRCIDPDAEKRPKMSHVVRMLEADEYPYREDRRNRKSATTTSLEIETVNDISGPSDAEKAVHSKSHAPEEAAEKAVHSKSHAPETS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03107 518 ProSiteProfiles Protein kinase domain profile. 182 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03107 518 SMART serkin_6 182 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03107 518 CDD STKc_IRAK 188 454 - -
Vifa1g03107 518 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Vifa1g03107 518 MobiDBLite consensus disorder prediction 489 518 - -
Vifa1g03107 518 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Vifa1g03107 518 Gene3D Transferase(Phosphotransferase) domain 1 258 472 - -
Vifa1g03107 518 MobiDBLite consensus disorder prediction 463 518 - -
Vifa1g03107 518 FunFam Putative receptor-like serine/threonine-protein kinase 258 468 - -
Vifa1g03107 518 PANTHER OS01G0323000 PROTEIN 1 478 - -
Vifa1g03107 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vifa1g03107 518 SUPERFAMILY Protein kinase-like (PK-like) 166 458 IPR011009 -
Vifa1g03107 518 FunFam Putative receptor-like protein kinase 164 257 - -
Vifa1g03107 518 Pfam Protein kinase domain 184 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03107 Vifa-Chr1 487773978 487776282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03107 146 456 Trihelix Transcription Factor Family AT1G70460 50.000 2.15e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa1g03107 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03107 - - gmx:100778444 790.03