Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03102 ATGGCACAGTTACCTCCTAAAATACCAACCATACCCCAAAATTGGCAACATTTTTCTCACCAAAAAGTACCATCATCCTCCACAATGTCAAATATCACCTCCACCACCACCACCACTGATCATCAACAAATACCATCATGGATCGACGAATTCCTCGACTTCTCCTCGGTAAGACGAGTAGCCCATCGGCGGTCCGCCAGTGACTCTATAGCCTTCCTCGAGACACCATTGCTCGAGGAAGACGGAAAAAGTGGTGATGGTGATGGAGATGGTGACTTTGATAGACTGGATGATGAACAATTGATTTCCATGTTCTCCGACAATGTTGGAGTCGGTGTCTCGTTTCCGCCTCCATCAACCTCCAATCCGTCGTCACCGTCGTCCGACCAAAATAGCAACAACAATGAAGAGAAACCAATGGCAATGGTGTTGGATTCTGCTGCACCACTGCAAGAACGTTATCTTTGTCATGAGGTGAAGCCTAAGGATGAAGCAGTTGAAGATGAAAGCTCGTGTAGAATTGAGGAGGAGGAGGCGGCGGCGCCGCCATCTTTTGCCGCGACCATCACCTGCACTGAAACCGTTGTTGATCCCAAGAGGGTCAAAAGAATATTGGCGAATCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAACTTGAAAGGAGTGTAACATCTTTGCAGACAGAGGTTTCAGCATTGTCACCACGAGTAGCATTCTTGGACCATCAACGTTTGATTCTTAATGTCGACAACAGTGCCTTAAAGCAAAGGATTGCAGCATTGGCCCAAGACAAGCTTTTTAAAGATGCTCATCAAGAAGCATTAAAGAAGGAAATAGAAAGGTTGAGACAAATCTACCACCAACAAAATATACATAAGATGGGGAATTCAATCAATAATAACAGCAACGATGGTCATTCTCTTCAATCACCACCAACATCACAACCACAACAACACTCTTTCCATAATCACTTGGAATGCAAAGACAAAGAGCAACTTCTCAGTTAA 1026 0.4474 MAQLPPKIPTIPQNWQHFSHQKVPSSSTMSNITSTTTTTDHQQIPSWIDEFLDFSSVRRVAHRRSASDSIAFLETPLLEEDGKSGDGDGDGDFDRLDDEQLISMFSDNVGVGVSFPPPSTSNPSSPSSDQNSNNNEEKPMAMVLDSAAPLQERYLCHEVKPKDEAVEDESSCRIEEEEAAAPPSFAATITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQNIHKMGNSINNNSNDGHSLQSPPTSQPQQHSFHNHLECKDKEQLLS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03102 341 MobiDBLite consensus disorder prediction 300 327 - -
Vifa1g03102 341 PANTHER BASIC LEUCINE ZIPPER 34 1 325 - -
Vifa1g03102 341 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 197 249 IPR004827 GO:0003700|GO:0006355
Vifa1g03102 341 MobiDBLite consensus disorder prediction 113 136 - -
Vifa1g03102 341 MobiDBLite consensus disorder prediction 108 136 - -
Vifa1g03102 341 FunFam Basic leucine zipper 61 198 271 - -
Vifa1g03102 341 SMART brlzneu 195 259 IPR004827 GO:0003700|GO:0006355
Vifa1g03102 341 MobiDBLite consensus disorder prediction 300 341 - -
Vifa1g03102 341 SUPERFAMILY Leucine zipper domain 199 253 IPR046347 GO:0003700|GO:0006355
Vifa1g03102 341 Pfam bZIP transcription factor 199 243 IPR004827 GO:0003700|GO:0006355
Vifa1g03102 341 Gene3D - 198 250 - -
Vifa1g03102 341 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 202 217 IPR004827 GO:0003700|GO:0006355
Vifa1g03102 341 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g03102 341 MobiDBLite consensus disorder prediction 9 38 - -
Vifa1g03102 341 CDD bZIP_plant_RF2 200 250 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03102 Vifa-Chr1 487004603 487007167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03102 1 277 bZIP Transcription Factor Family AT3G58120 52.721 9.47e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g03102 bZIP_1 1.3e-09 CL0018