Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03098 ATGGGCAATGTAAACCAATTGCTGCACCACAACCAACATTTTTTGGTTAATTTCAGAAGAAGCCCTAATTTGATGGATGATGATGAACATGGTTCACGCAAAAGGAGTAGAGGAAATGACCAACCTTCTAATCCTTTGGACAATCCTTCTCTTGCTCCTCCTGATGAAACACACACTGATGAGGTCAACAACAATGGTGTCCGGGTACCTCTTCCCGCCCGTCGACAATTTCGTCGACTCGCTATGCTTGATGTTCCATCAAATCATCCAGATAATGCTATGATCACTCCACCAACAAGCTCTCAAATTTTGCATCCTGATGGAGTACTCATGCCAGGGACATCTCTTAACCATCAAAGGGTTCGTCTCTTTTTCAATGTCCAAGTTCATAATGTTGCTTTGATGGACGAAATGGAAAATTCAGCGCACCAACAACGTAGACATATGCGTTTGAATATTGATGACAATACTTCTGAGGAGGATGTTTTAAATGATGAAATGGAAAATCTAATTGACCAACATCAATCTTTAATCTCACTTATTGAAGAAATGTCTGAAGAGGATTTTGCTTTATTTAATGAAATGGAAAATCCAGTTGACCAACGTCAAGTTGACCAACATCAAGATATGCGCTTGAATATTGATGGCATGTCTTATGAGGAACTTCTTCAATTGGGTGAGAGGATTGGAAGTGTATCCACCGGTTTATCAGATGAAACAATTGCCTTACAACTGAAGACTAAATATTTCTCACCAAGTCCCATTGCTATTAACTTGGAGGAATTACCACCTGAAGATGAAGAAACAAACTCCTGCATTATATGCCAGGAGGAGTTTAAGAATCAGGAGAAGATCGGTGTTATCAAATGCGAGCATGAATTTCATGCCGATTGCATAACACAATGGTTACTATTGAAGAATAGTTGCCCAATCTGCAAATTAGAAGCTTTGAATGATGGATAG 963 0.3936 MGNVNQLLHHNQHFLVNFRRSPNLMDDDEHGSRKRSRGNDQPSNPLDNPSLAPPDETHTDEVNNNGVRVPLPARRQFRRLAMLDVPSNHPDNAMITPPTSSQILHPDGVLMPGTSLNHQRVRLFFNVQVHNVALMDEMENSAHQQRRHMRLNIDDNTSEEDVLNDEMENLIDQHQSLISLIEEMSEEDFALFNEMENPVDQRQVDQHQDMRLNIDGMSYEELLQLGERIGSVSTGLSDETIALQLKTKYFSPSPIAINLEELPPEDEETNSCIICQEEFKNQEKIGVIKCEHEFHADCITQWLLLKNSCPICKLEALNDG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03098 320 MobiDBLite consensus disorder prediction 19 71 - -
Vifa1g03098 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 317 IPR013083 -
Vifa1g03098 320 Pfam Ring finger domain 270 313 IPR001841 -
Vifa1g03098 320 SUPERFAMILY RING/U-box 265 316 - -
Vifa1g03098 320 MobiDBLite consensus disorder prediction 22 37 - -
Vifa1g03098 320 Coils Coil 153 187 - -
Vifa1g03098 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 317 IPR045191 GO:0061630
Vifa1g03098 320 SMART ring_2 272 312 IPR001841 -
Vifa1g03098 320 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03098 Vifa-Chr1 485320530 485331228 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03098 182 317 C3H Transcription Factor Family AT2G15530 47.445 8.34e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03098 K19041 - psat:127086275 381.333