Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03095 ATGGGGATATATCTAAGTGCTCCAAAAACTGAGAAGGCCTCTGAAGATGCTCATCCATATTTGGACGAGTATACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGTAAAGCTGTTTCAAAATTCTGTGCCAAGTTTCTACACCAGCAGGTGCTTAGGCATGAAGCTTACTTAGCTGGAGATATAGCCACATCTTTACAGAAATCATTCCTCAGAATGGATGAGATGATGCACGGCCAAAGAGGGTGGAGAGAATTAGCAGTCTTGGGAGATAAAATGGAAAAGTTCTCTGGTATGCTAGAGGGGTTTATATGGTCTCCCAAGAGTAGTGAAGCCAATGACCGTGCCGATGAGTGGGCTTTTGAGGAGGGACCCCATTCCGATTTCGGTGGGCCAAACTCTGGAAGCACAGCTTGTGTGGCTGTCATCCGAGGAAACAAACTTGTTGTTGCAAATGCTGGTGATTCTAGATGTGTGTTATCAAGGAAAGGCCAGGCACACAACTTGTTTAAGGATCACAAGCCTGACCTTGAACTTGATAAAAACACTACGGAATTGGGTTTACCACTATATGATGGTGGCGATGCAGCTGATCTTTTTTATGATTGTGTTTTTGCTGATGTAGCTAAAGAAAAAGGTGCAGTGGAATTAGAGAAAGAAGAGCCAGCAAAACTTTTGAAAGATGTCTTAGAGAAAATGGCAGAGCAACTTGAGTTGAATCCAGTATATCAGGACTTTGCTTGA 744 0.4315 MGIYLSAPKTEKASEDAHPYLDEYTSYFGVYDGHGGKAVSKFCAKFLHQQVLRHEAYLAGDIATSLQKSFLRMDEMMHGQRGWRELAVLGDKMEKFSGMLEGFIWSPKSSEANDRADEWAFEEGPHSDFGGPNSGSTACVAVIRGNKLVVANAGDSRCVLSRKGQAHNLFKDHKPDLELDKNTTELGLPLYDGGDAADLFYDCVFADVAKEKGAVELEKEEPAKLLKDVLEKMAEQLELNPVYQDFA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03095 247 PANTHER PROTEIN PHOSPHATASE 2C 13 178 IPR015655 GO:0004722|GO:0006470
Vifa1g03095 247 ProSiteProfiles PPM-type phosphatase domain profile. 1 247 IPR001932 -
Vifa1g03095 247 CDD PP2Cc 15 182 IPR001932 -
Vifa1g03095 247 ProSitePatterns PPM-type phosphatase domain signature. 27 35 IPR000222 GO:0043169
Vifa1g03095 247 SUPERFAMILY PP2C-like 13 180 IPR036457 -
Vifa1g03095 247 Pfam Protein phosphatase 2C 22 78 IPR001932 -
Vifa1g03095 247 Pfam Protein phosphatase 2C 115 178 IPR001932 -
Vifa1g03095 247 Gene3D - 1 186 IPR036457 -
Vifa1g03095 247 SMART PP2C_4 1 234 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03095 Vifa-Chr1 485028459 485029277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03095 1 181 PP2C-type Phosphatase Gene Family AT4G31860 65.049 2.86e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03095 K17499 - gmx:100776787 327.02