Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03090 ATGGATCAGATGACGGATTCAGATATGGATCAACAACGGCAAGGCTATTTTCATTCTGAACATTGTGTTCTCATGAGAGGCCCCAGCGTCGGACATCCTAATATCCGTTCGGTGGTGACTGCTTCAGGGAACACATCTAATGGCGATTCTCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGATTACACAATATAACGGTGTTCAGCCTCAACATAATCTTGATATGGGCGTTGCAACTGCAGGCAACTTGCCAGGTTCAAGCACATTCGCGATTTCCGGAGTTTCCTTAGATAATTTTGGAAGAAGCAATGGTTTTGTGGATGACGGAAGAGGTCCGTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAACCACCAACATTTTAATGCTTCAACTAGTTCTTCTATCACTCCCCCAAATGCAAGACACCCTGATGGGGTTGCTATGATGGATAATGCGCCATTGCCATTCCGTGTTCCTTCACTCATTGGAGTAGGGCCGCATGGCGGTGCTTGGAGCAGGTCAGGCGAGTCTATTATGATGCACGATCATAATCATTTGATACACGGAAACTATTTGGGGCAGCACTTTCCACCAGCGGCTCCTCCTTGGTTGGACCAGCAAGTGAATAGTAATAACAATGATGGCCATACTACAGCCTGGAATCCGCCTGTTCCAATGCCTTATATACAAGCACCCACTATTAATGGAGGTTCATTAGAGAGTGCAAGTATGGGTTTACAGAGGTATCACGAAACAGCCGGAATAAGAGGTCACAATATCAGCTTTCACCCTCCGGTGACAGCAGCTTCATTTAGGGTTCCACCAAATCCTCCTCGCGGTTCTGTGATCCCTCCACCGACAGGTTTTGAGGCAGGTCCTAGGCATATTATCCCTGCACCATCAACTGGCTTCCGGATATACCGACCTCATAGGCTCATGCCAGAGACAGCTCTCGGACATCGAAGTCTACCTCCCGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATCTGATTGACCATCACCGAGATATGCGCTTGGACATTGAGGACATGTCTTACGAGGATCTTCTTGCATTGGGCGAAAGGATTGGCAGTGTAAACACTGGCTTATCAGAGGAAACAATTGCGAAAAAACTAAAGACGAAAGTTTATTCAACAAAATCCACTGCTATTAATCTGGAGGAGGTAGCTTCTGACGATCAGGAAACTGATTCTTGCATCATATGTCAGGAGGAGTTTAAGAACCAGGAGAGGATCGGCATTCTTCGATGTGAGCACGAGTACCACGTGGATTGCTTGACGAAGTGGTTGCTTGTCAAGAACGTCTGTCCTATATGCAAATCAGAAGCTTTGGCTACTGGAAGGAAGGATGCATAG 1410 0.4624 MDQMTDSDMDQQRQGYFHSEHCVLMRGPSVGHPNIRSVVTASGNTSNGDSHYLPDAYDNARVYGITQYNGVQPQHNLDMGVATAGNLPGSSTFAISGVSLDNFGRSNGFVDDGRGPYKRKIAEGMRGNHQHFNASTSSSITPPNARHPDGVAMMDNAPLPFRVPSLIGVGPHGGAWSRSGESIMMHDHNHLIHGNYLGQHFPPAAPPWLDQQVNSNNNDGHTTAWNPPVPMPYIQAPTINGGSLESASMGLQRYHETAGIRGHNISFHPPVTAASFRVPPNPPRGSVIPPPTGFEAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPVGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVNTGLSEETIAKKLKTKVYSTKSTAINLEEVASDDQETDSCIICQEEFKNQERIGILRCEHEYHVDCLTKWLLVKNVCPICKSEALATGRKDA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03090 469 FunFam E3 ubiquitin ligase BIG BROTHER 377 462 - -
Vifa1g03090 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 76 462 IPR045191 GO:0061630
Vifa1g03090 469 SMART ring_2 417 457 IPR001841 -
Vifa1g03090 469 Pfam Ring finger domain 415 458 IPR001841 -
Vifa1g03090 469 ProSiteProfiles Zinc finger RING-type profile. 417 458 IPR001841 -
Vifa1g03090 469 CDD RING-H2_RNF24-like 415 461 - -
Vifa1g03090 469 SUPERFAMILY RING/U-box 411 461 - -
Vifa1g03090 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 462 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03090 Vifa-Chr1 484682239 484684606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03090 334 464 C3H Transcription Factor Family AT2G15530 45.985 2.81e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03090 K19041 - gmx:100800642 608.601