Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03085 ATGAAGAAACCTAAGCAAACCCAGATGAACCCTAACTGGGTTCAACTCCAACAAAAGCTGAAGCTTAATGGCTCCAAAGCTTCAAGGACCTATGATTCTGAAGATGACACACCACATTCAATATTGGGGAAACGTAAAGAGAGGCTAAACGATGATTCTGATGATTGTGAGATTAACCCTCTTGATCCTGTAAATGATGATGCAAGTTTGACAGATGCTGTGGCTATGGATTGTGAAATGGTTGGGGTTGGTCAAGGAAACAAAAGTGCCCTCGCAAGAGTGTCGTTGGTAAACAAGTGGGGCAATGTTATTTACGACGAGTTTGTACGACCAATGGAGCGGGTTGTTGACTACCGTACTAAAATTAGTGGCATAAGACCTCAAGATCTGAGAAAAGCTAAGGATTTTTGTACTGCTCAAAAGAAGGTGGCAGAGTTGATCCACGGAAGAATCCTTGTAGGCCATGCCTTGTCCAATGATCTTAAGGCATTGTTACTAAGTCATCCCAAAAAGGATATAAGAGATACCTCCGAGTACCCACCGTTTCTAAGGTCAAGTGGTAGAGTAGCATTGCGGCATCTAGCTTCCGAACATCTTGGTGCTAAGATTCAAACAGGAGAGCACTGCCCGGTAGATGATGCCCGCGCTGCTATGATGCTTTACCAAAGAAATAGAAAAGAATGGGAGAAGAGCGTAAAAGGCAACTTTCGAAAGCAAAAGAAAAGGAAGAAGAATAAAGAGGCAAAATAA 750 0.428 MKKPKQTQMNPNWVQLQQKLKLNGSKASRTYDSEDDTPHSILGKRKERLNDDSDDCEINPLDPVNDDASLTDAVAMDCEMVGVGQGNKSALARVSLVNKWGNVIYDEFVRPMERVVDYRTKISGIRPQDLRKAKDFCTAQKKVAELIHGRILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLRSSGRVALRHLASEHLGAKIQTGEHCPVDDARAAMMLYQRNRKEWEKSVKGNFRKQKKRKKNKEAK 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03085 249 SMART exoiiiendus 72 230 IPR013520 -
Vifa1g03085 249 SUPERFAMILY Ribonuclease H-like 73 227 IPR012337 -
Vifa1g03085 249 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 38 237 IPR047021 GO:0004527
Vifa1g03085 249 MobiDBLite consensus disorder prediction 28 55 - -
Vifa1g03085 249 MobiDBLite consensus disorder prediction 230 249 - -
Vifa1g03085 249 Pfam Exonuclease 74 221 IPR013520 -
Vifa1g03085 249 MobiDBLite consensus disorder prediction 235 249 - -
Vifa1g03085 249 Coils Coil 211 231 - -
Vifa1g03085 249 Gene3D - 68 248 IPR036397 GO:0003676
Vifa1g03085 249 CDD REX4_like 74 222 IPR037431 GO:0006364|GO:0008408
Vifa1g03085 249 MobiDBLite consensus disorder prediction 22 58 - -
Vifa1g03085 249 FunFam Interferon-stimulated exonuclease gene 20 69 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03085 73 227 C2H2 Transcription Factor Family AT5G40310 38.012 6.38e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03085 K18327 - gmx:100819122 400.593