Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03076 ATGCGATCATTAGCTTCTTCATCGAGGAGGGGTAACGGTGATTCGGGTTCGAGGGTTAGGAAGAAACATAAGAAGTTGGATGCAATATGTGAGGAAGAGTATAATAGACACCATGGCGAGTTGAATGAGGGTGATGATTTGAATACTGATTCAGGGGTTCGGAGAAGCTCGCGGGTTAGGCGTGTACCGGTTGTACTTGATGCCTCTCCTTCGCCTAAGAAGAAAAGGCAGAAGTTAGTGAAAGATGTAATGGCGAAGAGTGTGGAAGGTGATAAGAATTTAGGGAGAGAAAGTGGGGGTTCTGGTGGTTTGAGATGGAGTTTGAGGTCGAGGTCAAGGAGTAAGAATGTGAGTTTTGAGGTGGAGGGGGAGAGAGAATTGCCTCGTAGGAAAAGGAAGCTGTTTGATGAGGAGTTGGAGGTTGTAGAGGTTGATAAGAATGAGGAGTTGGAAGTTGTAGAGGTTGATAAGAATGAGGAGTTGGAAGTTGTAGAGGTTGATAAGAATGAGGAGTTGGAAGTTGTAGAGGTTGATAAGAACAAGGAATTGGAGGTTGTGAAGGGTGATAGGAAGGAGGAGTTGGAGGTTGTTAAGAAAGTGGAGTTGAAAGGTTATACACGAAAAAGGTCTAGGTTGAAGAGAACGGGAAAATTTGAAGCGACAAAGTATGTAAAAGGGCTTGAGGAAAATGGGTGTCAGGGGAATTTGGATGAGATTAAGAGTCAAGAAGTGGAGCTTGTAGTTGTATTGAACCAAGGTGAGGGGAGTGCTTTGGTTCCGGAGACCGAATTGGCTGATGATAATAATCCAATAGATTTGAGGGATGAGAATGCTGCTTCCGAGATGGGGAATGAGGAGAGAATTGAAACAGACAATTTGCAAGCAGAGGAATGTAGTGGTGATGTTGAACCGTCTCCAGTGGAACCTGTAGAAACTGATGAGGAACAGGGTGATCAAGTAGAGAGTGAGAAGGAAGAAAAAGATGCAAGTGACGAGGTTGAAATTGCTGGAGCTTCAACTAAACAGGTAGATAATGAAGATTCTGATAAGGAGGTTCATATTGAGGAAAATATCTCGAAAGATGAGAATATTGGGAGGAAGGATGGGTTGAAACAAGCATCAAAAGACAGGTCTGGGTACCGATGTATCAAAGAGGGCAGACGGTGTGCTTTGTGTGGAAGAGGGAGCGACGGTAAGCCTCCAAAAAGGTTAACTCAGGATAAAGGTGAAAGTGAGAATGAAGCTTATAGTGGCTCATCAGCTTCAGAGCAGCCTACTTATGATACCTGGGATGGTTTTGACGATGAGCCTGACTGGCTTGGGCGTCTTTTGGGCCCTATAAATGATCGTTATGGTATTGCTGGAATATGGGTGCATCAGAATTGTGCTGTATGGAGCCCAGAGGTTTATTTTGCTGGTTTGGGATGTTTAAAAAATGTGAGGGCTGCACTTTGTCGAGGAAGAGCATTGAAGTGCACACGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGACCGTTGTCCTAAAACTTATCATTTGGCTTGTGCAAGAGCAAATGGTTGCATCTTTGATCATCGGAAATTTCTTATAGCTTGCACAGATCATCTGCATCTTTTCCAACCCTGTGGTAATAAATATTTAGTCCGGATAAAGAAGTTGAGGGCTAGGAAAATGATGTGGGAGACGAGGAAGCGTTCAAATGATGCTTCGAGAAAGGATATTGATGCAGAAGAGAGATGGTTGGAAAATTGTGGGGAGGATGAAGAATTTTTGAAACGCGAGAACAAGAGGCTTCAACGTGATCTATTGAGAATAGCCCCAATGTATATTGGTGGTTCAGACTCTGCTGGCAGTGAAAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTATACCTCTGCTATATCCTGATTTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCACGGGTATCCCGGGACAGGGAAAACCTTAGTGGTCCGGTCATTGATAGGTGCATGTGCTCGTGGAGATAGGCGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTGGGTGATGCTGAGCGTCAACTAAGACTGTTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGACTGGCACCCTGCCGAACTCCACAGCAAGACCAGACACATAGTTCTGTCGTATCAACATTGCTTGCTCTTATGGATGGTTTAAAATCTAGGGGCTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGATGCTGTTGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTACTTTCCGTTGCCATCAACTGAAGACAGAGCTTCCATTCTTTCACTTCACACACAGAAGTGGCCAAAACCAATTAGTGGATCCTTGCTTGGGTGGATTGCAAGGAAAACTTCTGGCTTTGCAGGTGCCGATCTTCAGGCTCTTTGTACCCAAGCGGCTATGAATGCACTGAAGAGAAATTTCCCTTTACAAAAGGTTCTATCTGTAGCTGAAAAAAGAACTTCTGGTTGTAAGAACACTCCTCTTCCATCATTTACCGTGGAGGAGAGAGATTGGGTAGAGGCTTTTTCGTGTTCGCCATTACCATGTTCCCAGAGAGAAGCTGGAAATGCTGCAAATGATGTAGTGTGTTCCCCTCTTCCTGTCCAACTTATTCCTTGTTTATTGCGGCCATTATGCACTATTCTTGTATCTCTTTATCTCGATGAACGTTTGTGGTTGCCACTTCCTATATCCAAAGCCATGACATTGATTAAGCATGTAATAGTTTCTGCTCTAGACAAAAAGAAAATGCCTATTGATCATTGGTGGTTGCACCTTGATGATTTTCTTCAAGAAACAAATGTTGCTTATGAGGTAAGTAAGTGCCTTAGTTGTTCTGGCATTTTATCTGCACACCATGGTTTTTCTGGTTCTTGCGATATTGTGAATCACACCGGTGAGAAACCCTCCATAAAAAACCATGCTAACCTGTGTAATGGTAGATTACCAGACATGCCATTTGGAATGACCAACAGTTCAGGTTTTCGAATATTGATTTATGGAAATCCCCGATCTGGCCAGAGACATCTTGCTTCATGCCTTCTTTACTGCTTTATTGGAAATATTGAAGTACAAAAGATTGACATGGCAACTATTTCACAAGAAGGGCATGGAGATATTGTGCAAGGGATTACACAAATATTAATGAAATGTTGTAGCATGAAATCTTGCGTAATATTCATGCCAAGAATTGATTTGTGGGCTGTGGAGGAGGATTTCAAAATTGCTGAAAAGACCGATTCCTGCTCAATAAGTCAACTATCATCTGAGACAAACAAGTCCTGTTTCACGCCCTGCCAAATTGCTGAGAAGGAAAATGGGATCAATACTGGGAAACACCCGACAGAGATGATCGAATATCAAGCCAACAAAAAGGCTTCATATGCCTGGATGACATTTATTGAGCAGGTGGAGTCCATTGGTTTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACTGAACTTCCACACAAGATAAGAGGATTCTTCAAGAGCTATCAATCAAAGGACAGACAATCAACTCCTATAGTGCAAACTGTTCCTCAATTCTCTCTGCAGATTGACGAGAAATTTGATCACGACTTGGCGATCAATCTATCTGCAATACAGCTTTTAAGAAACGTAATTGAGCAGCGGATTCAATTGATTCATCAGAGATCTCATGCTCACGTGGGTGTCCAGAAGCTTGACAGAGCCTATGACTCAATTGAAGTTTGTAAAGATAAGGTCACTCAGAGAAAAGAAAACGAACCAGGCCATGAGAAGAAGGGTGAAGTCCAATTTCCTGAATCCTTGACCAAAGTTATGCAACCCAACAACAGTAGGTCACTAAAAGGAAAGTCGAATCTTTTAATGGCAATATCCACATTTGGCTATCAAATTCTGCTATACCCTCATTTTGCTGAACTTTGTTGGGTCACTTCAAAAATCAAAGAAGGTCCTTGTTCTGATGTGAGTGGGCCTTGGAAGGGATGGCCTTTCAATTCGTGTATAATTCGTCCTACCAATTCACAAGACAAGGTGGTAATTTCCAGTAGCTCTGGTGGCACTAAAAGCAAAGAAAGTGCTGGTTTAGTTAGAGGCTTGGTTGCTGTTGCTTTATCAGCATACAGAGGTGTTTATAAATCAGTTAGAGAAGTTTCCCTTGAGGTAAGGAAAGTACTTGAGATCTTAACCGAGACAATTAACATGAAAATTCGAGCTGGGAGAAACAGATCTCAATATCTGCGTATTTTATCCCAAGTGGCTTATTTGGAAGATATGGTCAACAACTGGGCCTATGCATTGTTGAGTCTAGATCAGGCCTCCCCAGAGCATGCAGCAAAGGTCATACCAGCAGCTTCCGGGTCTTTAAACAGTCATCTCGGATGTGAAGACCGCCACATAGCCGAAGGCGAGGATTGCCATTTGGTTGTTCCTGCTGGTGGTGATGATTTGGAGACATTGGAGAAAAGTCCCAAGGGAGTTCCCACCGGAACAACCAAGTGGCTTTCCTTGAACAAAATAAATGATAATTTAGGTGATACTGTCTATGAAGGCCAAAGAGCACACTCTGAAGGATCTCCACATACCCATGGTTGTCCAGATATAAACCAATCTCTTCATCCATCCCTGAATCAGGAGAATGGGATGTTATCTGGAGTGTCTGAATCAGTATCTGCTGAAAATCACAAAGCTGCAGGTGGAGAACATGGAATGTCGAAAGACTTGAATAAATCCACATGCACTCGCCCTACAGTTGTTTCCGAAAATGGATTTCACACCTGTGAACAGGAGAATATTGAGATTGGCAACTCTAAATCCAGTAACGTTGAATCTGATAAACATGAGAATACTATAGATATCAACGCCTGTTCAAGTAAGGACAGCGGTCCAGCTGAAACTGGGGTTGTTTGCTTCTACCGTTGTTGCCCTCATTGTCTCAGAAGCCTCTATCATTTGACGCGCAAAATACTTGTTCGCGAATGGGGATCGAATAGAAGCCATTGGACAATAGAAGATGTCCATGATGCTGTTTCTACATTATCCGTGGATCTTATTTCAGCAGTTAGGAAATGTTACATGGCAGAAGAAAAAGCTTTCACTGATTTATCCAATAACAAAACATCTGTTGAATATTCAAACCCGACAACCTGTACCACCGAAAATCCAGGCAAAGATGTTGTGCGGGCTGAATGTGTTTCTCACTCAGCAAGTCATGATGCAAGTGTGAGTGAAGATGCTGTAACGAATGAACCGGTAACGCTTGATTTGAAATTTGTTTTCAGAGATGGTGTGCTAGTTCCTGTAGACCCTGCAAAGGATGCCCCTCTTCACTGTAAATTTCAGAAACTGTGTCTTTGTTCTCTGATAGAGTTGATAGTGAAAACTAAGGGCCCTTTAGATTAA 5550 0.427 MRSLASSSRRGNGDSGSRVRKKHKKLDAICEEEYNRHHGELNEGDDLNTDSGVRRSSRVRRVPVVLDASPSPKKKRQKLVKDVMAKSVEGDKNLGRESGGSGGLRWSLRSRSRSKNVSFEVEGERELPRRKRKLFDEELEVVEVDKNEELEVVEVDKNEELEVVEVDKNEELEVVEVDKNKELEVVKGDRKEELEVVKKVELKGYTRKRSRLKRTGKFEATKYVKGLEENGCQGNLDEIKSQEVELVVVLNQGEGSALVPETELADDNNPIDLRDENAASEMGNEERIETDNLQAEECSGDVEPSPVEPVETDEEQGDQVESEKEEKDASDEVEIAGASTKQVDNEDSDKEVHIEENISKDENIGRKDGLKQASKDRSGYRCIKEGRRCALCGRGSDGKPPKRLTQDKGESENEAYSGSSASEQPTYDTWDGFDDEPDWLGRLLGPINDRYGIAGIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHLHLFQPCGNKYLVRIKKLRARKMMWETRKRSNDASRKDIDAEERWLENCGEDEEFLKRENKRLQRDLLRIAPMYIGGSDSAGSENSFQGWESVAGLKDVIRCMKEVVIIPLLYPDFFDNLGLTPPRGVLLHGYPGTGKTLVVRSLIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTPQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPISGSLLGWIARKTSGFAGADLQALCTQAAMNALKRNFPLQKVLSVAEKRTSGCKNTPLPSFTVEERDWVEAFSCSPLPCSQREAGNAANDVVCSPLPVQLIPCLLRPLCTILVSLYLDERLWLPLPISKAMTLIKHVIVSALDKKKMPIDHWWLHLDDFLQETNVAYEVSKCLSCSGILSAHHGFSGSCDIVNHTGEKPSIKNHANLCNGRLPDMPFGMTNSSGFRILIYGNPRSGQRHLASCLLYCFIGNIEVQKIDMATISQEGHGDIVQGITQILMKCCSMKSCVIFMPRIDLWAVEEDFKIAEKTDSCSISQLSSETNKSCFTPCQIAEKENGINTGKHPTEMIEYQANKKASYAWMTFIEQVESIGLSTSLMILATSEVPYTELPHKIRGFFKSYQSKDRQSTPIVQTVPQFSLQIDEKFDHDLAINLSAIQLLRNVIEQRIQLIHQRSHAHVGVQKLDRAYDSIEVCKDKVTQRKENEPGHEKKGEVQFPESLTKVMQPNNSRSLKGKSNLLMAISTFGYQILLYPHFAELCWVTSKIKEGPCSDVSGPWKGWPFNSCIIRPTNSQDKVVISSSSGGTKSKESAGLVRGLVAVALSAYRGVYKSVREVSLEVRKVLEILTETINMKIRAGRNRSQYLRILSQVAYLEDMVNNWAYALLSLDQASPEHAAKVIPAASGSLNSHLGCEDRHIAEGEDCHLVVPAGGDDLETLEKSPKGVPTGTTKWLSLNKINDNLGDTVYEGQRAHSEGSPHTHGCPDINQSLHPSLNQENGMLSGVSESVSAENHKAAGGEHGMSKDLNKSTCTRPTVVSENGFHTCEQENIEIGNSKSSNVESDKHENTIDINACSSKDSGPAETGVVCFYRCCPHCLRSLYHLTRKILVREWGSNRSHWTIEDVHDAVSTLSVDLISAVRKCYMAEEKAFTDLSNNKTSVEYSNPTTCTTENPGKDVVRAECVSHSASHDASVSEDAVTNEPVTLDLKFVFRDGVLVPVDPAKDAPLHCKFQKLCLCSLIELIVKTKGPLD 1849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03076 1849 PANTHER AAA DOMAIN-CONTAINING 16 1756 IPR045199 -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 307 321 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 71 93 - -
Vifa1g03076 1849 Pfam AAA+ lid domain 826 858 IPR041569 -
Vifa1g03076 1849 SMART AAA_5 661 802 IPR003593 GO:0016887
Vifa1g03076 1849 ProSitePatterns AAA-protein family signature. 770 788 IPR003960 GO:0005524|GO:0016887
Vifa1g03076 1849 ProSiteProfiles Extended PHD (ePHD) domain profile. 418 538 IPR034732 -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 1 107 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 20 61 - -
Vifa1g03076 1849 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 384 540 - -
Vifa1g03076 1849 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 801 893 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 1568 1631 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 1579 1607 - -
Vifa1g03076 1849 Gene3D - 626 800 IPR027417 -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 411 427 - -
Vifa1g03076 1849 FunFam ATPase family, AAA domain-containing 2 624 807 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 267 294 - -
Vifa1g03076 1849 Pfam PHD-like zinc-binding domain 459 537 - -
Vifa1g03076 1849 Pfam ATPase family associated with various cellular activities (AAA) 665 800 IPR003959 GO:0005524|GO:0016887
Vifa1g03076 1849 Gene3D - 801 861 - -
Vifa1g03076 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 539 IPR013083 -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 394 428 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 255 372 - -
Vifa1g03076 1849 MobiDBLite consensus disorder prediction 343 372 - -
Vifa1g03076 1849 Coils Coil 583 603 - -
Vifa1g03076 1849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 858 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03076 Vifa-Chr1 481388134 481395937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03076 627 862 Calmodulin-binding Proteins AT3G56690 40.756 2.73e-44 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03076 - - gmx:100803849 2334.68