Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03073 ATGGAAGCAACTAAATTAGATAACTTTGAGAACAAGAAAGAAGATGAAGTTGTTCTTCCCGGATTTAGATTTCACCCAACAGATGAAGAGCTTGTCGGGTTTTATCTTCGGCGAAAAGTCGAGAAGAAGCCTCTTCATATCGAACTCATCAAAGAAATCGACATCTATAAATACGATCCATGGGATCTACCAAAACCTAGTACTACGGGGGAGAAAGAATGTTATTTTTTCTGTCTACGAGGAAGAAAATACAGGAACAGCATAAGGCCAAATAGAGTGACAGGATCTGGATTTTGGAAAGCTACAGGGATTGATAAATCTGTGTATTGTGTTAAAGAATCACATGAATGCATTGGATTGAAGAAATCATTGGTTTATTATAGTGGAAGTGCTGGAAAAGGTACGAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCAGCTAAAGGAAAAACTGGGAATGATAATCATGGCAATGATGTTCTTGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAACGAATCCCATCATTCAAAAAATACACACCAAATTTGAAAAAAGACTCAGAATCACCACCATTCACTACCACCACCAACAACAACTCTTCATCTTCCAAAACATGCAGCTTTGAATCCGACAACACCAAACCATACTTGACATTCACAGACTCGCAACTTGTTCAACAGAATCACGAAACAAAACCGTTCTTTAACGAACATGTCGACCAAAGGATTAACCACTCATTTCTAACTCAAGTTCCAACAACTTTGTCTCAATCAAGTTTTTGGAATGAACATCACAATGTGATTGATGATGAAGTAGCATTCGCAAATGAGAATTGGGATGATCTTAGATCTATGGTTCAGTTTACCTTTGATCCTTCAAAGGTTTATGATTGTAAAGACTTTAATTAG 921 0.3735 MEATKLDNFENKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLHIELIKEIDIYKYDPWDLPKPSTTGEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKSVYCVKESHECIGLKKSLVYYSGSAGKGTKTDWMMHEFRLPPAKGKTGNDNHGNDVLEAEVWTLCRIFKRIPSFKKYTPNLKKDSESPPFTTTTNNNSSSSKTCSFESDNTKPYLTFTDSQLVQQNHETKPFFNEHVDQRINHSFLTQVPTTLSQSSFWNEHHNVIDDEVAFANENWDDLRSMVQFTFDPSKVYDCKDFN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03073 306 SUPERFAMILY NAC domain 16 175 IPR036093 GO:0003677|GO:0006355
Vifa1g03073 306 ProSiteProfiles NAC domain profile. 18 176 IPR003441 GO:0003677|GO:0006355
Vifa1g03073 306 MobiDBLite consensus disorder prediction 186 212 - -
Vifa1g03073 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 253 - -
Vifa1g03073 306 MobiDBLite consensus disorder prediction 190 212 - -
Vifa1g03073 306 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Vifa1g03073 306 Gene3D NAC domain 27 179 IPR036093 GO:0003677|GO:0006355
Vifa1g03073 306 FunFam NAC domain-containing protein 35 27 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03073 Vifa-Chr1 481125929 481127737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03073 12 176 NAC Transcription Factor Family AT5G39820 59.218 1.65e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g03073 NAM 2.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03073 - - gmx:100784323 436.032