Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03060 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCACACATATCAAATGGTTCAAGCAATACTCACAATGAACATGTTGCAAATATTGAAATTGTGAGTTTGAATAAGCTCAGTGGAAGCCTTGAGAAGCTATTGAGTGATGTTGTTGATTATGATTACTGTGATGCTGAGATTGTTGTCGAAGAGATTCCGGTCGGTATTCATCGGTGTATACTGGCTTCGCGGAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGGAAAGATGGAGATTTGAAGGATGGAAAGGGAACCGGAAAGCCGAGTTATCAGATGAAAGATTTGGTGTGTTATGCTTGTATTCATGATTCGTGTCGTCCGGCTATTGATTATGCGTTGGAACTTATTTATGCTTCTTCCACATTTCAGATGAAAGAGCTTGTTTTGCTTTTTCAGAGGTATCTTCTAAATTTTGTTGATAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTGTAGCTGCCAATCATTGCCAACTAGACCAGCTTCTCTCTCATTGCATTCAAAGAGTAGCAAGGTCTGACATGGACATCATATCTTTGGAAAGAGAACTTCCTTATGAAGTTATGACCGAAATCAAATCGCTCCGAGTCCAATCTCTTCCAGAATCATCACCTGATGCGATGGAAGTAGAGCCTGTGATTATGAACGATAAGAGTATCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTAAAGCTTCTTTTAGACGAATCTAGTGTGACGCTTGACGATGCCTATGCGCTACACTACGCTTGTGCTTATTCCGATTCTAAGGTTGTTCAGGAAGTTCTTACTCTAGGATTGGCGGATATTCTCCTTAAGAATCCGCGCGGATACACTGTTCTTCACGTGGCTGCAAGACGAAAGGATCCGTCTATTTTGTGTGCATTATTGAAGAAAGGAGCTTGTGCATCAGAAACCACTCTTGATGGACAAACTGCTCTTTCGATTTGTCAGAGATTGACGAGACGAAAGGATTATAATATGAAGACAGTGCAGGGTAAGGAGTCTCATAAAGACAGGCTTTGTGTTGATGTACTTGAGAGAGAAATGAGAAGAAATTCTATGTCGGTGGACATGTCAGTTTTGTCGCAGTTAACTGCTGATGATTTGAACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGACTGTTCTTTCCTGCAGAGGCTAGGGTAGCCATAGAGAATGCCGAGGCCGATTCAACACCACTCTACGCAACTTTGTCGGCTCTTAAAGGAAATATAAAAGAAGTAGATCTAAATGAAACTCCTTCTTTTAGAACAAGAAAACTCCAATTAAGATTACAGTCCCTTGTAAAAACAGTTGAGAACGGTAGGCGTTTCTTTCCGCATTGTTCGGAGGTGCTTGATAAGTACCTAGAAGACGAGATGCCCGATGTTCATGTCCTAGAGAAGGGAACTGAGGAAGAGCAAAGAACGAAGAAAGCGCGGTTCATGGAACTTAGAGACGAGGTGCAGAAGGCATTTCACAAGGATATGGCTGAAAATAACCATTCACATTTTTCATCTTCTTTGACTTCTACAACATCATCTTCAACAAGAAGGGAAAGTCTTAACCACAAAGTGAGGAGAAAATGA 1668 0.4029 MDNSNEASSSLSFVSSHISNGSSNTHNEHVANIEIVSLNKLSGSLEKLLSDVVDYDYCDAEIVVEEIPVGIHRCILASRSQFFHELFKKGKDGDLKDGKGTGKPSYQMKDLVCYACIHDSCRPAIDYALELIYASSTFQMKELVLLFQRYLLNFVDKALVEDVIPILVAANHCQLDQLLSHCIQRVARSDMDIISLERELPYEVMTEIKSLRVQSLPESSPDAMEVEPVIMNDKSIRKILKALDSDDVELLKLLLDESSVTLDDAYALHYACAYSDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILCALLKKGACASETTLDGQTALSICQRLTRRKDYNMKTVQGKESHKDRLCVDVLEREMRRNSMSVDMSVLSQLTADDLNMRLDYLENRVAFARLFFPAEARVAIENAEADSTPLYATLSALKGNIKEVDLNETPSFRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKYLEDEMPDVHVLEKGTEEEQRTKKARFMELRDEVQKAFHKDMAENNHSHFSSSLTSTTSSSTRRESLNHKVRRK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03060 555 SMART BTB_4 58 190 IPR000210 GO:0005515
Vifa1g03060 555 Pfam Ankyrin repeats (3 copies) 245 322 IPR002110 GO:0005515
Vifa1g03060 555 Gene3D - 231 371 IPR036770 -
Vifa1g03060 555 MobiDBLite consensus disorder prediction 528 545 - -
Vifa1g03060 555 Pfam Domain of unknown function (DUF3420) 190 239 IPR024228 -
Vifa1g03060 555 Pfam NPR1/NIM1 like defence protein C terminal 339 537 IPR021094 -
Vifa1g03060 555 ProSiteProfiles Ankyrin repeat region circular profile. 297 322 - -
Vifa1g03060 555 FunFam regulatory protein NPR3-like 231 371 - -
Vifa1g03060 555 Pfam BTB/POZ domain 56 150 IPR000210 GO:0005515
Vifa1g03060 555 PANTHER REGULATORY PROTEIN NPR3 14 113 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vifa1g03060 555 ProSiteProfiles BTB domain profile. 58 141 IPR000210 GO:0005515
Vifa1g03060 555 SUPERFAMILY Ankyrin repeat 240 340 IPR036770 -
Vifa1g03060 555 SUPERFAMILY POZ domain 45 153 IPR011333 -
Vifa1g03060 555 ProSiteProfiles Ankyrin repeat profile. 297 322 IPR002110 GO:0005515
Vifa1g03060 555 SMART ANK_2a 297 326 IPR002110 GO:0005515
Vifa1g03060 555 SMART ANK_2a 263 293 IPR002110 GO:0005515
Vifa1g03060 555 Gene3D Potassium Channel Kv1.1; Chain A 21 187 IPR011333 -
Vifa1g03060 555 MobiDBLite consensus disorder prediction 523 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03060 Vifa-Chr1 479283325 479285804 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa1g03060 NPR1_like_C 7.4e-80 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03060 K14508 - gmx:100814739 750.355