Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03047 ATGGGTCGTTTGGATACTGCAAGGAAGAGCTTGCATCCTAGTGAGGCTGTGGAAATGTTTTGGAAGATGAATGAAAATGTTTTAGATCTGAGAAGTAACAAAGTATCAGCTCTGTTGGTCGAAGAAGCAAATGGAACGTATGATTCAGAAACTTTTGAAAGAAACTGTAGTGATGCACCTACTCAGATAAGGTCGGAAGCTGACAGTGTTGAGCATCGTATGTTGGGTCTAGAGTATTGGTCAAACAGGAGCTATTTAGGATTGGAATATTACGAGGGGACTATCAGTATTAAAATCATGCTTGTGGGGATTCATATGGGTCAGATTGAATCTGTAATGAAAATGGCGGATGAGGAGTGTAAGGCAAGGGAGCTCAAACAGAAATTTGAAGGGAAAACCGTTTTGCTTGGTATTGACGACATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGTGATGGAGCAGATGCTTAAACAACACCCTAAATGGCAAGGAAGAGCTGTTTTAGTACAAATAGTTAAACCAACTAGAGCTGTAAGGGATGGGATGAATTTGATGCCTTATGAGTATACTGTTTGCAGACAAGGAAGTGTTGAATTGGACAAAGCACTGGGGGTGGAAAATGATGAGGCTAAAAAGAGTGTTATCATTGTTTCTGAGTTCATTGGTTGTCCTCCTTCGCTCAGTTGCGCAATTCGGGTGAATCTGTGGAATATATGTTTGTGA 729 0.4019 MGRLDTARKSLHPSEAVEMFWKMNENVLDLRSNKVSALLVEEANGTYDSETFERNCSDAPTQIRSEADSVEHRMLGLEYWSNRSYLGLEYYEGTISIKIMLVGIHMGQIESVMKMADEECKARELKQKFEGKTVLLGIDDMDIFKGINLKILVMEQMLKQHPKWQGRAVLVQIVKPTRAVRDGMNLMPYEYTVCRQGSVELDKALGVENDEAKKSVIIVSEFIGCPPSLSCAIRVNLWNICL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03047 242 Gene3D Glycogen Phosphorylase B; 180 241 - -
Vifa1g03047 242 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 179 240 IPR001830 GO:0003824|GO:0005992
Vifa1g03047 242 Pfam Glycosyltransferase family 20 71 178 IPR001830 GO:0003824|GO:0005992
Vifa1g03047 242 Pfam Glycosyltransferase family 20 179 240 IPR001830 GO:0003824|GO:0005992
Vifa1g03047 242 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 69 240 - -
Vifa1g03047 242 Gene3D Glycogen Phosphorylase B; 107 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03047 Vifa-Chr1 477075015 477076073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03047 73 240 Trehalose Biosynthesis Gene Families AT1G06410 48.899 4.68e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03047 K16055 - gmx:100811463 198.749