Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03046 ATGGCGGATGCGGAGAAGCAATTGAGACACGAGAAGAATTATAAGTATATAAGCTCTCCTGATGTAGCTTATTGGGCTAAGAGTTTTGATCAAGATTTGGAGAGAGCTTGTAGGGAGCATTATGTGAAGAAGTGGTTGGATTTGGATGTTGGATTAGGACTCAATTTTAGAATCATTGCTTCAGATCCTAGTTTTAAGAAGCTTTTGTTGATTACACTGTCTCTGCTTATAGAGATACGTAGAGGATCACTAGACAAAACCCCTAGTTTGGATGTTATCTCTCTCTTGAATAGCTTATGTAGTGATCCCAAAAATGTAGTTTTCATTGTTAGTGGTAGGGATAGAGAATGCCTTAGCAAGTGGTTTTCTCCCTATGACAAACTTGGTCTCTTTGCAGAACATGGTTACTTCACTAGGTGGAGCAAAGATCCTCCTTTTTCATATGCACTGTCCAACCAGATTTTGAAGAAAGAGTTGTTCAAATTGCTGAAGGAAAATCATGGTGAAAAGTTCAATAGCTTGATTTTATTCAAACAATGGGATCTCGGAAAAATATTTCTAGTCTCATATTGA 573 0.3752 MADAEKQLRHEKNYKYISSPDVAYWAKSFDQDLERACREHYVKKWLDLDVGLGLNFRIIASDPSFKKLLLITLSLLIEIRRGSLDKTPSLDVISLLNSLCSDPKNVVFIVSGRDRECLSKWFSPYDKLGLFAEHGYFTRWSKDPPFSYALSNQILKKELFKLLKENHGEKFNSLILFKQWDLGKIFLVSY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03046 190 SUPERFAMILY HAD-like 79 180 IPR036412 -
Vifa1g03046 190 Pfam Trehalose-phosphatase 78 142 IPR003337 GO:0003824|GO:0005992
Vifa1g03046 190 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 146 IPR001830 GO:0003824|GO:0005992
Vifa1g03046 190 Gene3D - 75 176 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03046 Vifa-Chr1 477073153 477074992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03046 1 146 Trehalose Biosynthesis Gene Families AT2G18700 51.553 1.92e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03046 K16055 - gmx:100810498 190.274