Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03044 ATGGAAGGCTTCTACCACCATAGCCATCACATGAACAACATGAACAGTGACGCTCATTTACCACCTGGTTTTCGCTTCCACCCTACTGATGAAGAACTCATCACGTTCTACCTTCTCAAGAAAGTTCTTGACAACACTTTCAGTGCTAGAGCCATTGCTGAAGTTGATCTCAACAAATGTGAACCATGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGATAGGAAGTACCCAACTGGGTTGCGTACAAATCGAGCTACAGAAGCTGGTTATTGGAAAGCAACAGGAAAAGACAGAGAGATTTACAGCTCCAAAACCTACTCTCTCGTTGGAATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCACCCAAAGGTGAAAAGAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTTGCTTACCATTTCCTCTCTAGAAACTCCAAGGATGAATGGGTGATATCACGTGTGTTTCAAAAGAGCAACTCCGGGAACGGAAGCACCACCGTAACAGCCACCACAAATGGTTCAAAAAAGACCAAAATAGCCTCAACAACCTCTGCAAGTAACAATAGTACAAGTCTTTGCGCTGAACCAAGTTCACCTTCTTCAGTTTATCTTCCGCCTCTACTTGATTCATCTCCATACTCCAACAACGCCGTTGCTAGCACCGCCGCATTCAACGGCGGTCAAATGTATTCTTACAACAACAGCTCCAACAACAATGATCTAAAGGAGCACGTGTCCTGTTTCTCCACATCATCTACAACATCAAATGTTGTCTCTGACCACAACAACAGCCTTAACAACAACAACAACAACAACAATGGAAGTTTTGATCTTGTTTCACCTTCTATGAATGCAACAACTATGGATCCATTTGCTAGGTTTCAGAGAAATGTCGGTGTTTCTGCTTTTCCAAGCTTGCGTTCACTGCAAGATAATCTCCAGCTTCCTTTCTTTTTCTCCACTTCGGCTACGCAGCCTTTTCACGGTGGTGACGTTCTTGAAGGGTGGGGTATGCCGCAAGACGAGCAAAGGGCGGTGATTGACGGTGGTGGTCACAACATGGGAGGGTTAGGTTCATCTGAGCTTGATTGCATGTGGAACTATTAG 1152 0.4418 MEGFYHHSHHMNNMNSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFSARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNSGNGSTTVTATTNGSKKTKIASTTSASNNSTSLCAEPSSPSSVYLPPLLDSSPYSNNAVASTAAFNGGQMYSYNNSSNNNDLKEHVSCFSTSSTTSNVVSDHNNSLNNNNNNNNGSFDLVSPSMNATTMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSTSATQPFHGGDVLEGWGMPQDEQRAVIDGGGHNMGGLGSSELDCMWNY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03044 383 ProSiteProfiles NAC domain profile. 20 172 IPR003441 GO:0003677|GO:0006355
Vifa1g03044 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 267 - -
Vifa1g03044 383 FunFam NAC domain-containing protein 100-like 29 176 - -
Vifa1g03044 383 Gene3D NAC domain 29 177 IPR036093 GO:0003677|GO:0006355
Vifa1g03044 383 MobiDBLite consensus disorder prediction 176 207 - -
Vifa1g03044 383 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Vifa1g03044 383 SUPERFAMILY NAC domain 6 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03044 Vifa-Chr1 477062999 477064727 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03044 4 383 NAC Transcription Factor Family AT5G53950 49.505 8.73e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g03044 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03044 - - vun:114185732 454.136