Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03037 ATGGAAGGCTTCTACCACCATAGCCATCACATGAACAACATGAACAGTGACGCTCATTTACCACCTGGTTTTCGCTTTCACCCTACTGATGAAGAACTCATCACGTTCTACCTTCTCAAGAAAGTTCTTGACAACACTTTCAGTGCTAGAGCCATTGCTGAAGTTGATCTCAACAAATGTGAACCGTGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGATAGGAAGTACCCAACTGGGTTGCGTACAAATCGAGCTACAGAAGCTGGTTATTGGAAAGCAACAGGAAAAGACAGAGAGATTTACAGCTCCAAAACCTACTCTCTCGTTGGAATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCACCCAAAGGTGAAAAGAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTTGCTTACCATTTCCTCTCTAGAAACTCCAAGGATGAATGGGTGATATCACGTGTGTTTCAAAAGAGCAACTCCGGAAATGGAAGCACCACCGTGACAGCCACCACCAGTGGTTCAAAAAAGACCAAAATGGTTTCAACAACCTCTGCAAGCAATAACAACAGTATGAGTCTTTGCGCTGAGCCAAGTTCACCTTCTTCGGTTTACCTTCCTCCTCTACTTGATTCATCTCCATACTCCAACAACGCTGCTGCTAGCACCACCGCATTCAATGGCGGTCAAATGTGTTCTTACAACAACAGCTCCAACAACACTGATCTAAAGGAGCACGTGTCCTGTTTCTCCACATCATCTACAACATCTAATGTTGCCTCTGGTCACAACAACAGCTTTAACAACAACAACAGCAATGGAAGTTTCGATCTTGTTTCACCTTCTATGAATGCAACAACTATGGATCCATTTGCTAGGTTTCAGAGAAATGTCGGTGTTTCTGCTTTTCCAAGCTTGCGTTCACTGCAAGATAATCTTCAGCTGCCTTTCTTTTTCTCCACTGCGTCAACGCAGCCTTTTCACGGTGGTGATGTTCTTGGGGGGTGGGGTATGCCGCAGGAGGAGCAAAGAGCGGTGGTTGACGGAGGCGGTCTTAACATGGGAGGGTTAGGTTCATCTGAGCTTGATTGCATGTGGAACTACTAA 1149 0.4482 MEGFYHHSHHMNNMNSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFSARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSNSGNGSTTVTATTSGSKKTKMVSTTSASNNNSMSLCAEPSSPSSVYLPPLLDSSPYSNNAAASTTAFNGGQMCSYNNSSNNTDLKEHVSCFSTSSTTSNVASGHNNSFNNNNSNGSFDLVSPSMNATTMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSTASTQPFHGGDVLGGWGMPQEEQRAVVDGGGLNMGGLGSSELDCMWNY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03037 382 ProSiteProfiles NAC domain profile. 20 172 IPR003441 GO:0003677|GO:0006355
Vifa1g03037 382 FunFam NAC domain-containing protein 100-like 29 176 - -
Vifa1g03037 382 MobiDBLite consensus disorder prediction 176 207 - -
Vifa1g03037 382 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Vifa1g03037 382 SUPERFAMILY NAC domain 6 172 IPR036093 GO:0003677|GO:0006355
Vifa1g03037 382 Gene3D NAC domain 29 177 IPR036093 GO:0003677|GO:0006355
Vifa1g03037 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03037 Vifa-Chr1 476247147 476248965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03037 4 382 NAC Transcription Factor Family AT5G53950 50.490 1.53e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g03037 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03037 - - vun:114185732 449.514