Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03033 ATGGAGGATCTTGCAGGTCTAGTTGAGGCAACAGGATCAAGATTCACTTCATTAGAGCTTATTGGGCAGGGATCATTTGGCGATGTATATAAAGGGTTTGACAGGGAGCTCAACAAAGAAGTTGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGACATTGACGACATTCAGAAGGAAGTTTCTGTTCTGTCACAATGTCGTTGTCCATACATTACTGAGTATTATGGTTCTTTTCTCAACCAAACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTAGTAGGTTACTTCTCTTTATTTCTTCTATATGTTCAGTGCATAAAATTTGAAGTTGATGTTTGA 366 0.3852 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDRELNKEVAIKVIDLEESEDDIDDIQKEVSVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLVGYFSLFLLYVQCIKFEVDV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03033 121 SMART serkin_6 15 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03033 121 SUPERFAMILY Protein kinase-like (PK-like) 13 105 IPR011009 -
Vifa1g03033 121 Coils Coil 48 68 - -
Vifa1g03033 121 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vifa1g03033 121 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 107 - -
Vifa1g03033 121 Gene3D Phosphorylase Kinase; domain 1 2 92 - -
Vifa1g03033 121 Pfam Protein kinase domain 16 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03033 121 ProSiteProfiles Protein kinase domain profile. 15 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03033 Vifa-Chr1 475358821 475363084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03033 1 102 MAP Kinase Kinase Kinase Kinase AT3G15220 82.353 1.55e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vifa1g03033 Pkinase 1.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03033 K08838 - gmx:100814188 185.267