Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03011 ATGATCACCGCCATTCTCCGAAGAGCTTCTTCCACACTCTCCAGGCGCGCCATACCCGCCGCCGAGGCTCTCCTTTCCACCACCGCCTCGGCCGAGCTCCGACAACTCTCTGCTCTCACAGCCAGACCCTTCCACACAAAATCACAACCCTTGCTATTTCGCGCCTCTTCGGCTTCCCGCGCTGGTCACGCTGCCGAAGCTTTTCCGTTCGAGGAACCAGCTAAAGCGAACGGCGATGATGGTCTTGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACGAAGCTTTTCCCCATTCAGAGGGCTGTGTTGGAGCCTGCTATGCAAGGTCGTGATATGATCGGTCGTGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATTCCCATCATTGACAAAATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCGAAGCAGGTTGAGAAGGAATTCTATGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGGACACCAATTTCTCAACAAATGAGGCAGCTTGATTATGGTGTTGATATAGCAGTTGGGACACCGGGGAGAATTATTGATCTTCTTAATAGAGGTGCGCTGAATTTGAAGGAGGTTCAGTTTGTTATTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGGTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCAAAGAGACAGACTCTTATGTTTTCTGCAACAATGCCTACTTGGATAAAGCAGTTAACAAGGAATTACCTAAAAGATCCCATAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTGGCAGATGGGATTTCACTCTTCTCAGTTGCATCTGATGCATATGTCAAAGCAGGAATTCTCGTTCCTCTAATAAAAGAACATGCAAAGGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCACATGGCATGTCAAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGATTCAGAAATGGTCATTTTAATGTTTTAGTGGCGACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATTCATTACGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGAAGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTCATTTATTCAGAAGATCAATCCAGGACTCTTAGGACTATTGAGCGCGATGTAGGCTGTAAATTTAAAGAGTTACCAAAGATTGCCGTTGATAGTGGATCAGTGTCTGCATTTGGTAGCATGGGTGGTGGGCGATTTGGTGGTGGAGGTTCGAGTGGCCAATTTGGTGGTGGAGGTTTTAGCCGTGGTAGCCGTTCTGGGGGCTATGGTAATTCAGGTGATAGGTTTTCTGGTTCAAGACCATCTGGAGGGGGGTTTTCTGGCAATTCATCTGGTGGATATGGTGGCGGATCAAGCTCTGGTCGTTTTGGCTCCTTTGGTTCAGATCGCTCCAGTGGTTTTGGAAATTTTGGGTCGGCTAAACCTAGTGCATTTGGTGATCGTCGTGGCAGGGATTGA 1680 0.4625 MITAILRRASSTLSRRAIPAAEALLSTTASAELRQLSALTARPFHTKSQPLLFRASSASRAGHAAEAFPFEEPAKANGDDGLEIAKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPITIDLVGDSDQKLADGISLFSVASDAYVKAGILVPLIKEHAKGGKCIVFTQTKRDADRLSHGMSKSIPCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYSEDQSRTLRTIERDVGCKFKELPKIAVDSGSVSAFGSMGGGRFGGGGSSGQFGGGGFSRGSRSGGYGNSGDRFSGSRPSGGGFSGNSSGGYGGGSSSGRFGSFGSDRSSGFGNFGSAKPSAFGDRRGRD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03011 559 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Vifa1g03011 559 MobiDBLite consensus disorder prediction 492 545 - -
Vifa1g03011 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 287 IPR014001 -
Vifa1g03011 559 Pfam DEAD/DEAH box helicase 106 275 IPR011545 GO:0003676|GO:0005524
Vifa1g03011 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 442 IPR027417 -
Vifa1g03011 559 CDD SF2_C_DEAD 313 430 - -
Vifa1g03011 559 SMART ultradead3 101 304 IPR014001 -
Vifa1g03011 559 MobiDBLite consensus disorder prediction 476 559 - -
Vifa1g03011 559 CDD DEADc 93 288 - -
Vifa1g03011 559 Gene3D - 310 463 IPR027417 -
Vifa1g03011 559 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 64 463 - -
Vifa1g03011 559 Pfam Helicase conserved C-terminal domain 315 421 IPR001650 -
Vifa1g03011 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 460 IPR001650 -
Vifa1g03011 559 FunFam ATP-dependent RNA helicase RhlE 74 290 - -
Vifa1g03011 559 SMART helicmild6 341 421 IPR001650 -
Vifa1g03011 559 Gene3D - 83 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03011 Vifa-Chr1 473352694 473356234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03011 80 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.679 1.69e-71 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03011 - - tpra:123920937 827.009