Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03009 ATGAATATTTCTATGTCTTGTTTCACCTTTCTTCTCTACACCTTCTTTCTCTTGTCTACTCTTTCTCTTTCATCATCACTTCCTTTGTCTTTGAAAACTCAAGCTTCAGTCTTAGTTTCTCTGAAACAAGATTTCCAATCCAAAACCTCTTTACAAACATGGAACATATCTAAGTACATGTCCCTTTGTACAACTTGGTATGGCATTCGATGTAACACAAACCATACTTCTGTTGTGTCACTCGACATATCAAACTCGAATGTTTCTGGAACCTTCTCGTCTTCCATCACAAAGCTAACAAGCTTGAGGTTCCTCAACATATCAAACAACATGCTCAATGGAAACCTAACTTGGAAATTCTCAAAGCTCAAAGAGCTCGAGGTTTTCGATGCTTACAACAATGAGTTCAATTCTTCACTTCCTCTTGGAGTCACTGAGTTGCATGGTCTCAAGTACTTGAATTTCGGCGGAAACTTTTTCCATGGAGACATTCCTGCAAGATATGGAAACATGTTGAGTTTGGAATATCTGTCTCTTGCAGGTAATGATTTGAGAGGTTTCATACCTTTTGAGCTTGGAAATCTTGTTAACTTGACACATCTTTTTTTAGGCTATTACAATGTGTTTGAAGGTGAGATTCCAAATGATTTTGGTAAACTTGTTAATTTGGTTCATCTTGATCTTGCTAACTGTGGTTTGAAAGGTGAAATTCCACATGAGTTAGGTAAACTTTACAAACTAGACACACTTTTCTTGCAAACCAATCAACTTAGTGGTTCAATTCCTTCTGAATTAGGGAATTTGACTAGTTTGAAATCTCTTGATTTGTCCAATAACGAGTTGATTGGAAACATACCTAAAGAGTTTTCTAATCTTCATCAACTCACACTCTTGAACTTGTTCATTAACAAACTTAATGGTGATATTCCATCTTTTGTTTCTGAGTTGCCGAATTTGGAAGTGTTGAAGCTTTGGCATAATCACTTCGAAGGTTCTATTCCTTCGAAGCTTGGAGAGAATGGTAAATTGATCGAGCTTGATTTATCGACGAACAAGCTCACTGGACTAGTTCCTAGATCTTTATGCATTGGAAAAAAGCTCGAGATTTTGATTTTACTCAACAATTTTCTGTCTGGCTCTTTGCCTAATGAGCTTGGTGAATGTTACACACTCGAAAGAGTTCGTTTAGGACGAAACAATTTAACAGGTTTGGTACCGAAAGGTTTTCTTTATTTGCCTGAGATCTCACTTCTTGAACTGCAGAACAATTTTCTCAGTGGTTTTCTTGCACAGCAAGAAATCACTAACACAAACAGTTCTAAACTCGGAGAGATGAATCTGTCGAACAATCGTTTATCTGGATCTCTCCCGAGTTCTATTGGAAATTTTCCGAATTTGCAGATTCTGCTTCTTCATGGAAATAGATTCTCAGGTGAAATTCCTCAAGATATAGGAAAGTTGAAGAAAATTCTAAGGTTGGATATGAGTTTCAACAACTTTTCAGGAAAAATTCCTGTTGAGATAGGTGAATGTTCTTCACTTACCTATTTAGATTTGAGTCAGAATCAATTATCAGGTCCTATTCCAATTCAGGTTTCACAAATTCACATACTTAACTATCTTAATGTGTCATGGAACAATCTAAACCAAACACTTCCTAAGGAACTTGGTTCTATTAAGGGCTTAACTTCAGCTGATTTCTCTCATAACAATTTCTCTGGCTCAATTCCTGAAATAGGACAATTCTCAGTGTTCAATTCTACTTCCTTTATCGGTAATCCCAAGTTATGTGGATATGAATCGAATCCATGCAGCCGTACTTCATCAGAAACATCTGAGTCTCCGAATCAAGAAAACGGTCGTGCGAAACGTGGAATTCTGGTAAAGTATAAGCTTCTATTTGCATTAGGACTTTTGGTTTGTTCGTTGGTTTTCGCAACGTTTGCTGTTATCAAAAGTCGAAAAGGAATTCGGAAGGACTCAAATTCATGGAAGTTAACAGCATTTCAGAAGATCGAATATGGAAGTGAAGACATCTTAGGTTGTGTAAAAGAAAGTAACATCATAGGAAGAGGTGGAGCTGGTGTTGTATATGGTGGAACAATGCCTAATGGAGAAAAAGTAGCTGTGAAAAAGTTGTTAGGAGTTCACAAAGGTTGTTCTTATGATAATGGTTTATCAGCTGAAATAAAAACACTTGGTAGAATAAGGCACAGATACATTGTGAAGTTGTTGGCATTTTGTTCAAATGGAGACACAAATTTGCTTGTTTATGAGTATATGACAAATGGTAGTTTAGGTGAAGTGTTGCATGGAAAAAGAGGGGGGTTTCTTGAGTGGAAAGTTAGGGTGAAAATAGCAAGTGAAGCTGCTAAAGGACTTTGCTATTTGCACCATGATTGTTGTCCTTTGATAGTTCATAGAGATGTTAAGTCAAATAATATTTTGTTGGATTCTGAATTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGAGAATAATGGTGGAACTTCTGAATGCATGTCTTCTATTGTTGGTTCTTATGGATACATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTATATAGCTTTGGAGTGGTGCTACTAGAGCTATTGACAGGGAGAAGACCAGTGGGAGATTTTGGTGAAGATGGAATGGATATTGTTCAATGGACAAAGTTACAAACTGATTGGAACAAAGAAAGTGTGGTGAAGATTCTTGATGGAAGGTTACATGAGATTCCTATAGAGGAAGCAATGCATATATTGTTTGTGGCTATGTGTTGTGTTGAAGAACAAAGTGTGGAAAGACCAACTATGAGGGAAGTTGTTGAAATGCTAGCACAAGTAAAGCAACCGAATGCATTTCATGTGTCATTAAGGAAATAG 2922 0.3686 MNISMSCFTFLLYTFFLLSTLSLSSSLPLSLKTQASVLVSLKQDFQSKTSLQTWNISKYMSLCTTWYGIRCNTNHTSVVSLDISNSNVSGTFSSSITKLTSLRFLNISNNMLNGNLTWKFSKLKELEVFDAYNNEFNSSLPLGVTELHGLKYLNFGGNFFHGDIPARYGNMLSLEYLSLAGNDLRGFIPFELGNLVNLTHLFLGYYNVFEGEIPNDFGKLVNLVHLDLANCGLKGEIPHELGKLYKLDTLFLQTNQLSGSIPSELGNLTSLKSLDLSNNELIGNIPKEFSNLHQLTLLNLFINKLNGDIPSFVSELPNLEVLKLWHNHFEGSIPSKLGENGKLIELDLSTNKLTGLVPRSLCIGKKLEILILLNNFLSGSLPNELGECYTLERVRLGRNNLTGLVPKGFLYLPEISLLELQNNFLSGFLAQQEITNTNSSKLGEMNLSNNRLSGSLPSSIGNFPNLQILLLHGNRFSGEIPQDIGKLKKILRLDMSFNNFSGKIPVEIGECSSLTYLDLSQNQLSGPIPIQVSQIHILNYLNVSWNNLNQTLPKELGSIKGLTSADFSHNNFSGSIPEIGQFSVFNSTSFIGNPKLCGYESNPCSRTSSETSESPNQENGRAKRGILVKYKLLFALGLLVCSLVFATFAVIKSRKGIRKDSNSWKLTAFQKIEYGSEDILGCVKESNIIGRGGAGVVYGGTMPNGEKVAVKKLLGVHKGCSYDNGLSAEIKTLGRIRHRYIVKLLAFCSNGDTNLLVYEYMTNGSLGEVLHGKRGGFLEWKVRVKIASEAAKGLCYLHHDCCPLIVHRDVKSNNILLDSEFEAHVADFGLAKFLLQENNGGTSECMSSIVGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEDGMDIVQWTKLQTDWNKESVVKILDGRLHEIPIEEAMHILFVAMCCVEEQSVERPTMREVVEMLAQVKQPNAFHVSLRK 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03009 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 652 760 - -
Vifa1g03009 973 SUPERFAMILY Protein kinase-like (PK-like) 679 958 IPR011009 -
Vifa1g03009 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Vifa1g03009 973 Pfam Leucine Rich Repeat 270 292 IPR001611 GO:0005515
Vifa1g03009 973 SMART LRR_typ_2 123 147 IPR003591 -
Vifa1g03009 973 SMART LRR_typ_2 316 340 IPR003591 -
Vifa1g03009 973 SMART LRR_typ_2 171 195 IPR003591 -
Vifa1g03009 973 SMART LRR_typ_2 268 291 IPR003591 -
Vifa1g03009 973 SMART LRR_typ_2 463 487 IPR003591 -
Vifa1g03009 973 SMART LRR_typ_2 220 244 IPR003591 -
Vifa1g03009 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 174 960 - -
Vifa1g03009 973 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Vifa1g03009 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 208 313 - -
Vifa1g03009 973 Pfam Protein kinase domain 685 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03009 973 SUPERFAMILY L domain-like 367 610 - -
Vifa1g03009 973 SUPERFAMILY RNI-like 79 416 - -
Vifa1g03009 973 SMART serkin_6 683 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03009 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 120 207 - -
Vifa1g03009 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 761 972 - -
Vifa1g03009 973 ProSiteProfiles Protein kinase domain profile. 683 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03009 973 Gene3D Ribonuclease Inhibitor 189 266 IPR032675 -
Vifa1g03009 973 Gene3D Ribonuclease Inhibitor 267 341 IPR032675 -
Vifa1g03009 973 Gene3D Ribonuclease Inhibitor 342 608 IPR032675 -
Vifa1g03009 973 Gene3D Phosphorylase Kinase; domain 1 666 760 - -
Vifa1g03009 973 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 320 608 - -
Vifa1g03009 973 Gene3D Transferase(Phosphotransferase) domain 1 761 970 - -
Vifa1g03009 973 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03009 Vifa-Chr1 473185292 473188468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03009 22 963 Receptor kinase-like Gene Family AT5G65700 55.201 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g03009 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03009 - - gmx:100816158 1412.13