Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03008 ATGGCTGCCAGAGATATCCTTCATAAGATGAAGGAAAAAGTTGGGTTTGGTTTATCAGACCCTGATTCAGGGAAAGGCAAGAGCAAGATGTCGAAACACATAACTCACGGCTTTCACTTGGTTAAAGGAAAATCATATCATGAAATGGAGGATTATCTTGTTGCCAGATTTAAGCAAATCGATAACCATGAATTAGGCTTGTTTGCAATATTTGATGGTCATGCTGGTCACAATGTACCTAACTACCTACAGTCTCATTTGTTCGATAATATCTTAAAAGAGCCTGACTTCTGGAGAGAACCTGAAGATGCTGTCAAGAGAGCGTATAGTATAACCGATTCTAGTATTTTAGAGAAGTCAGGTGAATTGGGTAGAGGGGGTTCAACCGCGGTTACTGCAATATTGGTTAACGGTCAGAAGTTAATAGTAGCCAATATTGGAGACTCTCGGGCTGTCTTATCAAAGAAAGGCGTGGCCAAACAACTCTCGGTCGATCATGAACCAACCACAGAACACGAGGATATCAAAAATAGAGGTGGTTTCGTATCAAGGTTTCCCGGTGACGTTCCACGAGTTGATGGACGGTTGGCAGTGTCGAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCATATGTGACAGTTGAGAAGATAAATGATGATGCAGAGTTTATTATATTAGCCAGTGATGGATTATGGAAGGTAATGTCGAATCAAGAAGCGGTTAATTGCATCAAAGATATAAAGGATGCTCGGACTTCAGCAAAGCGTCTCACTGAAGAAGCGGTTAACAGGAAAAGCAGTGACGATATCTCGTGCATTGTTGTGAAACTTCAGTGA 852 0.4167 MAARDILHKMKEKVGFGLSDPDSGKGKSKMSKHITHGFHLVKGKSYHEMEDYLVARFKQIDNHELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWREPEDAVKRAYSITDSSILEKSGELGRGGSTAVTAILVNGQKLIVANIGDSRAVLSKKGVAKQLSVDHEPTTEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPYVTVEKINDDAEFIILASDGLWKVMSNQEAVNCIKDIKDARTSAKRLTEEAVNRKSSDDISCIVVKLQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03008 283 Pfam Protein phosphatase 2C 47 275 IPR001932 -
Vifa1g03008 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Vifa1g03008 283 PANTHER PROTEIN PHOSPHATASE 30 281 IPR015655 GO:0004722|GO:0006470
Vifa1g03008 283 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Vifa1g03008 283 SMART PP2C_4 30 280 IPR001932 -
Vifa1g03008 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Vifa1g03008 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Vifa1g03008 283 Gene3D - 30 283 IPR036457 -
Vifa1g03008 283 CDD PP2Cc 36 282 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03008 Vifa-Chr1 472961598 472964300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03008 1 283 PP2C-type Phosphatase Gene Family AT3G15260 73.356 6.44e-158 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03008 K17506 - gmx:100500617 504.982