Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03007 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCTCATGGTGTCATGGAAGATAAAGGCCTAGGACAGGATGCTAATAATATTCATAGAACGGTAGGTAATGAGTGCACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACTTGGAGGCACAATATGAGACTGATGGTGGACCAGATGGTGCCTGTAGACTGCAAAATGAGGGAACAGCTAATGATGGAGATGCTTTGAGAGAATCCAACTTACAGGCTGTTGGTAGTAAAGCATCTACGGCTGGAAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCTATGTTCCCTCAAAATAGCTTGGATTCAGGAAAGGAATCAAAAAGTGGATCGGACTATAGAAATGCAGGGGGATCCGAAGATAATTCTTTGGATGGAGAAACAGGAAGGGTAGACTCAGAAGATGATGATGGACAAAAAGAGGCAGGTAAAGGCCGAAGAAGTCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAGAGTGACTCATTGCATTATAATGGGATTCACAAGCCCAGTGGACGGAATTCACAGCCTCATCTGATGTCTAATTCTGTGAAAAGAACCGTGCATAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGACGTTGACTATGAAGAAGAGGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCTGAGAACAGCCATGCCTTAAACAAGGATAAAAATTGGGAAGGTGTAGGATCTGATGAAAATGATGACAGTGATGAAAGTCTAGATGTCTCTGATGATGACGAATCTTTCTATACCAAAAAACCCAAGGGAAGGCAACAAGGTAAAGTTCGAAAAAGTATAAAATCTACCAGAGATCGCAAATCGGGTGTTGCATCTGGCAGACAAAGAAGATTGAAATCATCTTTTGAAGACAATGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGACGATTTTAAAAGCACACGAAAGAGAAATTTCAATGCCCGCAAGAATAACAGTCGCTTTTCTGTAACTAGTTTTTCTACGCTCAACAGTGACGTTCGCACTTCTCGTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGAACATCAGAAGATGCTCAAAGTAATAATAGATCATCCGAGCCTGTTTTAACGAGTCACTTGTTTGATTCCGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAGGGGCAGTCTCATTTGCACTGTCAATGGAAGTCTTTTGTAGAGCTACAAAATCTCAGTGGCTTTAAGAAAGTTTTGAACTATACAAAGAAAATAATGGAGGACATCAGATACCGGAAGACAATCTCAAGGGAGGAGATTGAGGTCTATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATCATTGCAGATAGGATCAATAAAGATAATTCTGGCAATGTTATCCCCGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACACTGATATCTCTTTTGCTCAACATTCAATTGATGAATATAGGGTCCGAGAGGCTGCAATGTCTGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAGGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTGATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTGTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTCGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTGGGTACTCGAGCAAGTAGAGAGGTTTGTCAACAATATGAATTTTATGATGACAAAAAGCCCGGTAGACCAATAAAGTTCAATGCACTGTTGACTACATATGAAGTGATTTTGAAAGATAAGGCCGTTCTCTCCAAGATCAAATGGAATTATTTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTACACTTCCCTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGTACTCCGCTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGAAGTGACAGTAATAAACTTGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCGCAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGGTACGTCAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTAGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCCAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAAGGTAGATTGGAGAAGAAAGAAGTCAAAAAGGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGGTTTGGAGCAGAAGAACTTTTTAAGGAAGAAAGAAATGAGGAAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACGGATGAAGGAGAACAAGGAAGCGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGCAAGTTTTTGGAGTCGTTGGATAAAGCCTGATGCTGTATGCCAAGCTGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCTGAGGCTGATCCATCTGAAAGGAGTAATAAAAGGAAAAAGAAGGAATTTGAACCACCCGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCCGTCATGAAGTTCGGGAATGAGAACCAAATCGATTTAATTGCGGCCGACGTTGGTGGTGCAGTTGTGGCAGTTCCTCCTGAAGCACAGATAGAACTTTTCAATGCACTAATTGATGGTTGTTCAGAAGCAGCGGAAATTGGAAATCTGGACCCTAAGGGGCCTGTGCTAGATTATTTTGGTGTCCCAGTGAAAGCAAATGATATACTTACTCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGTATTAGCCGGTATGAAGATCCCATTGCACAATTCCGCGTTTTATCGTATCTCAAACCTTCAAACTGGTCCAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGACTTGGCCTTACGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTCGGGGTAAAAAATGTGAATAGCAAAGTGGCACGGAAGCCTTCCAAGAAAGAGAGAGAACAGACCATGAATATCTCACTGTTGCGCGTACAGGAGAAGAAGAAAAAACCGGGGTCTGTTAATGTCCAAATGAGAAAAGGTAGGTTTCAGAAACCCCAAAAGGCGGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGATAATGAGGAAGTATATGAGCAGTTTAAGGATGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAACGAAAACTTTGGAACGTCTCAAGAGATTGCAGAGAACTAGTGCTGATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGCCACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTTGAAAATGAAGCGGAACCCTATAAGCAAGATAGGATGACTGTCCGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGACGAGGCTGGGGTTGGTCCTTCTGGTTCATTTAGCAGAAATGGTAACCCATTCCATCGCCACATGGAGAGGCAAAGAGGATTAAAAAACATGGCTAACTACCAAATGTCAGAACCCGATAATAATGCAGGAAATTCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCTCCTCCTCAAAGAACCACGGGTAATGGGATCCGGATTACGGATCCTAAATCACTCGGGATCCTTGGTGCTGGACCATCTGATAGACGCTTTGTTAGTGGGAAACCTTTGAAAACACAACCTGGTGGGGTTCCTTCAAGTCAAGGTTTTTCCTAA 5217 0.4102 MAFFRNFVNDTVSHGVMEDKGLGQDANNIHRTVGNECTDATSSEKEFDMNLEAQYETDGGPDGACRLQNEGTANDGDALRESNLQAVGSKASTAGRWGSTFWKDCQPMFPQNSLDSGKESKSGSDYRNAGGSEDNSLDGETGRVDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPSGRNSQPHLMSNSVKRTVHRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPAENSHALNKDKNWEGVGSDENDDSDESLDVSDDDESFYTKKPKGRQQGKVRKSIKSTRDRKSGVASGRQRRLKSSFEDNESTTEDSDSDSDDDFKSTRKRNFNARKNNSRFSVTSFSTLNSDVRTSRRAVRKISYVESDESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTSEDAQSNNRSSEPVLTSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVYDVSKEMDLEIIRQNSQVERIIADRINKDNSGNVIPEYLVKWQGLSYAEVTWEKDTDISFAQHSIDEYRVREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKPGRPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDSNKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSEVRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNEEESKKRLLSMNIDEILERAEKVEEKTDEGEQGSELLSAFKVANFCNGEDDASFWSRWIKPDAVCQAEEALAPRSARNIKSYAEADPSERSNKRKKKEFEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAVPPEAQIELFNALIDGCSEAAEIGNLDPKGPVLDYFGVPVKANDILTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLTKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSKVARKPSKKEREQTMNISLLRVQEKKKKPGSVNVQMRKGRFQKPQKAEPIVKEEGEMSDNEEVYEQFKDVKWMEWCQDVMVEETKTLERLKRLQRTSADLPKEKVLSKIRHYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSGSFSRNGNPFHRHMERQRGLKNMANYQMSEPDNNAGNSEAWKRRRRSESDDHFQGQPPPQRTTGNGIRITDPKSLGILGAGPSDRRFVSGKPLKTQPGGVPSSQGFS 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03007 1738 SMART DUF4208_2 1513 1618 IPR025260 -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 382 410 - -
Vifa1g03007 1738 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 233 1668 - -
Vifa1g03007 1738 CDD CD1_tandem 409 489 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1658 1738 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 138 169 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 57 76 - -
Vifa1g03007 1738 SUPERFAMILY Chromo domain-like 408 491 IPR016197 -
Vifa1g03007 1738 CDD CD2_tandem 522 577 - -
Vifa1g03007 1738 Gene3D - 847 1077 IPR027417 -
Vifa1g03007 1738 SMART chromo_7 409 492 IPR000953 -
Vifa1g03007 1738 SMART chromo_7 522 581 IPR000953 -
Vifa1g03007 1738 SUPERFAMILY Chromo domain-like 503 577 IPR016197 -
Vifa1g03007 1738 FunFam protein CHROMATIN REMODELING 5 isoform X2 526 578 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1207 1235 - -
Vifa1g03007 1738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 936 1087 IPR001650 -
Vifa1g03007 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 411 499 IPR000953 -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1202 1236 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1684 1700 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 108 135 - -
Vifa1g03007 1738 SMART ultradead3 612 808 IPR014001 -
Vifa1g03007 1738 Pfam Helicase conserved C-terminal domain 933 1046 IPR001650 -
Vifa1g03007 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1122 IPR027417 -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 305 328 - -
Vifa1g03007 1738 Gene3D - 1343 1447 - -
Vifa1g03007 1738 Gene3D - 607 846 IPR038718 -
Vifa1g03007 1738 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 847 1077 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 108 355 - -
Vifa1g03007 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 524 588 IPR000953 -
Vifa1g03007 1738 CDD SF2_C_SNF 923 1057 - -
Vifa1g03007 1738 Pfam Domain of unknown function (DUF4208) 1526 1617 IPR025260 -
Vifa1g03007 1738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 800 IPR014001 -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1668 1683 - -
Vifa1g03007 1738 Gene3D - 397 523 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 189 208 - -
Vifa1g03007 1738 FunFam Chromo domain-containing protein 1 399 524 - -
Vifa1g03007 1738 Coils Coil 1130 1150 - -
Vifa1g03007 1738 Pfam SNF2-related domain 635 904 IPR000330 GO:0005524|GO:0140658
Vifa1g03007 1738 FunFam Photoperiod-independent early flowering 1 586 860 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 1622 1642 - -
Vifa1g03007 1738 SMART helicmild6 962 1046 IPR001650 -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 224 246 - -
Vifa1g03007 1738 MobiDBLite consensus disorder prediction 247 266 - -
Vifa1g03007 1738 Pfam Chromo (CHRromatin Organisation MOdifier) domain 525 577 IPR023780 -
Vifa1g03007 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 837 IPR027417 -
Vifa1g03007 1738 Gene3D - 526 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03007 Vifa-Chr1 472778077 472796143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03007 638 1073 RAD5 or RAD16-like Gene Family AT1G02670 25.992 1.73e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g03007 SNF2_N 2.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03007 K11367 - gmx:100792398 2891.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03007 1 472778077 472796143 Vifa1g03007 1 472778077 472796143 ECH