Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g03007 | ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCTCATGGTGTCATGGAAGATAAAGGCCTAGGACAGGATGCTAATAATATTCATAGAACGGTAGGTAATGAGTGCACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACTTGGAGGCACAATATGAGACTGATGGTGGACCAGATGGTGCCTGTAGACTGCAAAATGAGGGAACAGCTAATGATGGAGATGCTTTGAGAGAATCCAACTTACAGGCTGTTGGTAGTAAAGCATCTACGGCTGGAAGGTGGGGTTCGACATTTTGGAAGGACTGCCAACCTATGTTCCCTCAAAATAGCTTGGATTCAGGAAAGGAATCAAAAAGTGGATCGGACTATAGAAATGCAGGGGGATCCGAAGATAATTCTTTGGATGGAGAAACAGGAAGGGTAGACTCAGAAGATGATGATGGACAAAAAGAGGCAGGTAAAGGCCGAAGAAGTCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAGAGTGACTCATTGCATTATAATGGGATTCACAAGCCCAGTGGACGGAATTCACAGCCTCATCTGATGTCTAATTCTGTGAAAAGAACCGTGCATAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGACGTTGACTATGAAGAAGAGGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGCTGAGAACAGCCATGCCTTAAACAAGGATAAAAATTGGGAAGGTGTAGGATCTGATGAAAATGATGACAGTGATGAAAGTCTAGATGTCTCTGATGATGACGAATCTTTCTATACCAAAAAACCCAAGGGAAGGCAACAAGGTAAAGTTCGAAAAAGTATAAAATCTACCAGAGATCGCAAATCGGGTGTTGCATCTGGCAGACAAAGAAGATTGAAATCATCTTTTGAAGACAATGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGACGATTTTAAAAGCACACGAAAGAGAAATTTCAATGCCCGCAAGAATAACAGTCGCTTTTCTGTAACTAGTTTTTCTACGCTCAACAGTGACGTTCGCACTTCTCGTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGAACATCAGAAGATGCTCAAAGTAATAATAGATCATCCGAGCCTGTTTTAACGAGTCACTTGTTTGATTCCGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAGGGGCAGTCTCATTTGCACTGTCAATGGAAGTCTTTTGTAGAGCTACAAAATCTCAGTGGCTTTAAGAAAGTTTTGAACTATACAAAGAAAATAATGGAGGACATCAGATACCGGAAGACAATCTCAAGGGAGGAGATTGAGGTCTATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTGGAAAGAATCATTGCAGATAGGATCAATAAAGATAATTCTGGCAATGTTATCCCCGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACACTGATATCTCTTTTGCTCAACATTCAATTGATGAATATAGGGTCCGAGAGGCTGCAATGTCTGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAGGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTGATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTGTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTCGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTTAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTGGGTACTCGAGCAAGTAGAGAGGTTTGTCAACAATATGAATTTTATGATGACAAAAAGCCCGGTAGACCAATAAAGTTCAATGCACTGTTGACTACATATGAAGTGATTTTGAAAGATAAGGCCGTTCTCTCCAAGATCAAATGGAATTATTTGATGGTAGATGAAGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTACACTTCCCTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACCGGTACTCCGCTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCCTAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATTTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAGGAAGTGACAGTAATAAACTTGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCGCAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGGTACGTCAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTAGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCCAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAAGGTAGATTGGAGAAGAAAGAAGTCAAAAAGGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGGTTTGGAGCAGAAGAACTTTTTAAGGAAGAAAGAAATGAGGAAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACGGATGAAGGAGAACAAGGAAGCGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGCAAGTTTTTGGAGTCGTTGGATAAAGCCTGATGCTGTATGCCAAGCTGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCTGAGGCTGATCCATCTGAAAGGAGTAATAAAAGGAAAAAGAAGGAATTTGAACCACCCGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCCGTCATGAAGTTCGGGAATGAGAACCAAATCGATTTAATTGCGGCCGACGTTGGTGGTGCAGTTGTGGCAGTTCCTCCTGAAGCACAGATAGAACTTTTCAATGCACTAATTGATGGTTGTTCAGAAGCAGCGGAAATTGGAAATCTGGACCCTAAGGGGCCTGTGCTAGATTATTTTGGTGTCCCAGTGAAAGCAAATGATATACTTACTCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGTATTAGCCGGTATGAAGATCCCATTGCACAATTCCGCGTTTTATCGTATCTCAAACCTTCAAACTGGTCCAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGACTTGGCCTTACGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTCGGGGTAAAAAATGTGAATAGCAAAGTGGCACGGAAGCCTTCCAAGAAAGAGAGAGAACAGACCATGAATATCTCACTGTTGCGCGTACAGGAGAAGAAGAAAAAACCGGGGTCTGTTAATGTCCAAATGAGAAAAGGTAGGTTTCAGAAACCCCAAAAGGCGGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGATAATGAGGAAGTATATGAGCAGTTTAAGGATGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAACGAAAACTTTGGAACGTCTCAAGAGATTGCAGAGAACTAGTGCTGATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGCCACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTTGAAAATGAAGCGGAACCCTATAAGCAAGATAGGATGACTGTCCGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGACGAGGCTGGGGTTGGTCCTTCTGGTTCATTTAGCAGAAATGGTAACCCATTCCATCGCCACATGGAGAGGCAAAGAGGATTAAAAAACATGGCTAACTACCAAATGTCAGAACCCGATAATAATGCAGGAAATTCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCAGGGTCAGCCTCCTCCTCAAAGAACCACGGGTAATGGGATCCGGATTACGGATCCTAAATCACTCGGGATCCTTGGTGCTGGACCATCTGATAGACGCTTTGTTAGTGGGAAACCTTTGAAAACACAACCTGGTGGGGTTCCTTCAAGTCAAGGTTTTTCCTAA | 5217 | 0.4102 | MAFFRNFVNDTVSHGVMEDKGLGQDANNIHRTVGNECTDATSSEKEFDMNLEAQYETDGGPDGACRLQNEGTANDGDALRESNLQAVGSKASTAGRWGSTFWKDCQPMFPQNSLDSGKESKSGSDYRNAGGSEDNSLDGETGRVDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPSGRNSQPHLMSNSVKRTVHRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPAENSHALNKDKNWEGVGSDENDDSDESLDVSDDDESFYTKKPKGRQQGKVRKSIKSTRDRKSGVASGRQRRLKSSFEDNESTTEDSDSDSDDDFKSTRKRNFNARKNNSRFSVTSFSTLNSDVRTSRRAVRKISYVESDESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTSEDAQSNNRSSEPVLTSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVYDVSKEMDLEIIRQNSQVERIIADRINKDNSGNVIPEYLVKWQGLSYAEVTWEKDTDISFAQHSIDEYRVREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKPGRPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDSNKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSEVRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNEEESKKRLLSMNIDEILERAEKVEEKTDEGEQGSELLSAFKVANFCNGEDDASFWSRWIKPDAVCQAEEALAPRSARNIKSYAEADPSERSNKRKKKEFEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAVPPEAQIELFNALIDGCSEAAEIGNLDPKGPVLDYFGVPVKANDILTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLTKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSKVARKPSKKEREQTMNISLLRVQEKKKKPGSVNVQMRKGRFQKPQKAEPIVKEEGEMSDNEEVYEQFKDVKWMEWCQDVMVEETKTLERLKRLQRTSADLPKEKVLSKIRHYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSGSFSRNGNPFHRHMERQRGLKNMANYQMSEPDNNAGNSEAWKRRRRSESDDHFQGQPPPQRTTGNGIRITDPKSLGILGAGPSDRRFVSGKPLKTQPGGVPSSQGFS | 1738 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g03007 | 1738 | SMART | DUF4208_2 | 1513 | 1618 | IPR025260 | - | |
| Vifa1g03007 | 1738 | MobiDBLite | consensus disorder prediction | 382 | 410 | - | - | |
| Vifa1g03007 | 1738 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 233 | 1668 | - | - | |
| Vifa1g03007 | 1738 | CDD | CD1_tandem | 409 | 489 | - | - | |
| Vifa1g03007 | 1738 | MobiDBLite | consensus disorder prediction | 1658 | 1738 | - | - | |
| Vifa1g03007 | 1738 | MobiDBLite | consensus disorder prediction | 138 | 169 | - | - | |
| Vifa1g03007 | 1738 | MobiDBLite | consensus disorder prediction | 57 | 76 | - | - | |
| Vifa1g03007 | 1738 | SUPERFAMILY | Chromo domain-like | 408 | 491 | IPR016197 | - | |
| Vifa1g03007 | 1738 | CDD | CD2_tandem | 522 | 577 | - | - | |
| Vifa1g03007 | 1738 | Gene3D | - | 847 | 1077 | IPR027417 | - |
Showing 1 to 10 of 46 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g03007 | K11367 | - | gmx:100792398 | 2891.29 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g03007 | 1 | 472778077 | 472796143 | Vifa1g03007 | 1 | 472778077 | 472796143 | ECH |
Showing 1 to 1 of 1 entries