Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03000 ATGGCGTTACCAAGATGTTTCTGGTTGACACTATTTCAGTGTTGTGTCTTGTCTTCCTTACTTGGTTTTTCTTTGAGTCTTGATAATAGGACTCAATCTTGTGATCCTAGTGATTTATCAGCTCTGAAAGAGTTTGCAGGAAACCTTACAAATGGTTCCATTGTCAAACTATGGTCCAATGATAGTGTTTGCTGCAAATGGATTGGGGTTGTGTGTGGTGGTGAGAATAATGGAGAATCTGTTACTAGAGTGACAAAATTGATTCTTTCTGAGATGAGTCTCAATGGAACAATTTCACCTTCTTTAGCAAAACTAGAATATCTCACTGTGTTGAACCTTTCATACAACCATCTTGAGGGTAAATTGCCTCAAGAGTTATCAAAATTGAAGAACTTGAAGTTTCTTGATTTGAGCCATAACATGTTGTTGGGACCTGTTTCTAAGTCACTTTCTGGTTTGTCTTCCATTGAAGTGTTGAATATTTCAAGTAATTCATTTTCTGAAGACTTCTTGTTTCAGTCTGTGGAGTTTACACATCTTCTTGCTCTCAATGTGAGTAACAATTCATTCACTGGTAAATTCAGTTCTCAAATTTGCAATTCTTCAAAGGCTCTTCACACACTTGATTTATCTTCCAACCGATTCGATGGCAATCTTGAAGGTTTGAACAACTGCTCTTTATCTCTCCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCCTTTACCAGATTCATTGTATTCAATGTTAGCCTTGGAACAGTTATCACTCTCTGCCAACAATATTTCTGGCAAGTTAAGCAATGATTTAAGTAAGCTTACTAGTCTAAAATCTCTTGTGGTTTCTGCGAACCGATTTTCAGGCGAAATCCCAAATGTTTTTGAGAATCTTTTGCAGTTAGAACACTTAGTAGCACATGCTAACTCATTTTCTGGACCATTACCTTCCACTTTGGCTTCATGCTCTAAGCTTAGAGTACTTGATCTTAAAAATAACTCTTTGTCGGGTCCAATCGATCTTAATTTCACCGGATTAACTCGGCTTTGTTCGCTAGACCTTGCTAGTAATCATTTAACTGGACCACTTCCCAGTTCTTTGTCCTATTGCCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTGTACCTGAAAATTATGCCGAATTATCTTCTCTTTTGTTTGTATCTTTTTCAAACAACAGCTTAGAGAATTTATCTGGTGCACTTTCTGTTCTTCCGAAGTGCAAGAATCTAACAACTCTTATCCTTACCAAGAATTTCCACGGTGAGGAAATTCCGCAAAGTGTGCCAACTGCAGGATTTCAAAGTCTCATGGTGCTAGCACTTGGAAACTGTGGTCTGAAAAATCACATTCCTTCTTGGCTATTGAAATGCAGGAAATTGGCGGTGCTTGATTTGTCTTGGAACTCTTTGAATGGCAGTATTCCTTCGTGGATCGGTGAAATGGACAGTTTGTTCTATTTGGATTTCTCGAATAATTCTTTCTCGGGAGAAATACCGAAAAGTTTGACAGAGATGAAGGGACTCCTGTGCTCGAATTGTGGAAGACCAAATCTGGCTTCATATGCTTTCATTCCGCTCTTTGTTAAAAGAAACACCAGTGTTAGTGGTTTGCAATATAATCAAGCTTCAAGTTTCCCTCCTTCGATTTTATTGAGCAATAACATGTTGAGTGGAAGCATATGGCCAGAAATCGGTAATTTGAAGGCACTTCATGTGTTGGATTTCAGCAGGAACAACATCAGCGGTAGCATTCCAATTTCTATTTCTGAGATGGAGAATCTGGAAACATTGGATTTGTCTTATAATGATCTATCTGGTACAATCCCTCCCACATTTAACAACCTCACATTCTTGTCGAAGTTTAGTGTGGCGCATAATCACTTGCAAGGACCGATTCCGAGCGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGATAATGATATTGATAATGTCACTCCTTGCAAGATTGTTAACAATATGAGGCCTGGTTTTTCTTCTGGTTCATCGAGAAAATTTAATAGAGGCAATGTTCTTGGCATAACAATCAGCATAGGAGTAGGTCTTGCTTTGCTGCTTGCGTTTGTTGTGGTAAGAATGGCAAAGAGGGAAGAAGATAAAACTCTCGGTGGCTTCGACGAAGAGATGAATAGTAGTAGGCCACAAAGGTTATCAGCTGAAGCACTTTTTTCGTCTAAATTGGTGCTTTTTCAGAATGCAGATTGCAAGGATCTCACAGTTTCGGATTTGTTAAAAGCGACAAACAATTTCAACCAAACGAATATTGTTGGTTGTGGCGGATTCGGTCTTGTTTATAAGGCTTATCTTCCGAATGGCACAAAAGCGGCTGTCAAAAGGCTCTCTGGCGACTGCGGTCAGATGGAACGGGAATTCCAAGCCGAAGTCGAGGCTCTCTCTCGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCACGGCAATGACAGGTTGCTAATTTACTCGTACATGGAAAATGGAAGCTTGGACTATTGGCTTCACGAATGCGTGGATGAAAGTTCAGCTCTCAAATGGGATGTCCGACTCAAGATTGCACAAGGCGCAGCTCGTGGATTAGCTTACTTGCACAAGGGGTGCGAACCGTTTGTAGTCCACCGTGATGTTAAATCGAGCAACATTCTTTTGGATGATAAGTTTGAAGCTCATTTAGCCGATTTCGGTCTCTCAAGACTACTTCAACCGTACGATACCCACGTCACAACAGATTTAGTAGGAACTCTAGGTTACATTCCTCCTGAATATAGTCAGACACTGACAGCAACGTTCCGCGGCGATGTCTATAGTTTCGGCGTCGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCGGTGGAAGTCATAAAGGGGAAAAACTGCAGGAATCTGGTGTCTTGGGTTTATCAAATGAAGTATGAAAATAATGAGCAGGAAATTTTTGATAAAGCCATATGGGAAAAGGAAAGGGAGAAACAACTATTGGAAGTGCTTTCCATTGCTTGTAAATGTCTTGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATGGTGTGAGTTTTGATGGCTCTCAACAATGA 3183 0.4031 MALPRCFWLTLFQCCVLSSLLGFSLSLDNRTQSCDPSDLSALKEFAGNLTNGSIVKLWSNDSVCCKWIGVVCGGENNGESVTRVTKLILSEMSLNGTISPSLAKLEYLTVLNLSYNHLEGKLPQELSKLKNLKFLDLSHNMLLGPVSKSLSGLSSIEVLNISSNSFSEDFLFQSVEFTHLLALNVSNNSFTGKFSSQICNSSKALHTLDLSSNRFDGNLEGLNNCSLSLQRLHLDSNSFSGPLPDSLYSMLALEQLSLSANNISGKLSNDLSKLTSLKSLVVSANRFSGEIPNVFENLLQLEHLVAHANSFSGPLPSTLASCSKLRVLDLKNNSLSGPIDLNFTGLTRLCSLDLASNHLTGPLPSSLSYCHELKVLSLARNGLNGSVPENYAELSSLLFVSFSNNSLENLSGALSVLPKCKNLTTLILTKNFHGEEIPQSVPTAGFQSLMVLALGNCGLKNHIPSWLLKCRKLAVLDLSWNSLNGSIPSWIGEMDSLFYLDFSNNSFSGEIPKSLTEMKGLLCSNCGRPNLASYAFIPLFVKRNTSVSGLQYNQASSFPPSILLSNNMLSGSIWPEIGNLKALHVLDFSRNNISGSIPISISEMENLETLDLSYNDLSGTIPPTFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDNDIDNVTPCKIVNNMRPGFSSGSSRKFNRGNVLGITISIGVGLALLLAFVVVRMAKREEDKTLGGFDEEMNSSRPQRLSAEALFSSKLVLFQNADCKDLTVSDLLKATNNFNQTNIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDESSALKWDVRLKIAQGAARGLAYLHKGCEPFVVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYENNEQEIFDKAIWEKEREKQLLEVLSIACKCLDQDPRQRPSIEMVVSWLDGVSFDGSQQ 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03000 1060 Gene3D Transferase(Phosphotransferase) domain 1 855 1056 - -
Vifa1g03000 1060 SMART LRR_sd22_2 346 372 - -
Vifa1g03000 1060 SMART LRR_sd22_2 129 155 - -
Vifa1g03000 1060 SMART LRR_sd22_2 202 224 - -
Vifa1g03000 1060 SMART LRR_sd22_2 580 609 - -
Vifa1g03000 1060 SMART LRR_sd22_2 250 273 - -
Vifa1g03000 1060 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Vifa1g03000 1060 SUPERFAMILY L domain-like 445 662 - -
Vifa1g03000 1060 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Vifa1g03000 1060 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Vifa1g03000 1060 Pfam Leucine rich repeat 228 287 IPR001611 GO:0005515
Vifa1g03000 1060 Pfam Leucine rich repeat 83 142 IPR001611 GO:0005515
Vifa1g03000 1060 FunFam Leucine-rich repeat receptor-like kinase 37 156 - -
Vifa1g03000 1060 Gene3D Ribonuclease Inhibitor 297 682 IPR032675 -
Vifa1g03000 1060 SUPERFAMILY RNI-like 183 518 - -
Vifa1g03000 1060 ProSiteProfiles Protein kinase domain profile. 779 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03000 1060 SMART serkin_6 779 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03000 1060 PANTHER LEUCINE RICH REPEAT KINASE 2 276 1052 - -
Vifa1g03000 1060 Gene3D Ribonuclease Inhibitor 37 151 IPR032675 -
Vifa1g03000 1060 Gene3D Ribonuclease Inhibitor 225 296 IPR032675 -
Vifa1g03000 1060 FunFam Leucine-rich repeat receptor-like protein kinase 855 1060 - -
Vifa1g03000 1060 SUPERFAMILY L domain-like 82 221 - -
Vifa1g03000 1060 Pfam Leucine Rich Repeat 606 628 IPR001611 GO:0005515
Vifa1g03000 1060 FunFam Phytosulfokine receptor 1 742 854 - -
Vifa1g03000 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 339 - -
Vifa1g03000 1060 SUPERFAMILY Protein kinase-like (PK-like) 763 1050 IPR011009 -
Vifa1g03000 1060 SMART LRR_typ_2 604 627 IPR003591 -
Vifa1g03000 1060 SMART LRR_typ_2 274 297 IPR003591 -
Vifa1g03000 1060 SMART LRR_typ_2 346 370 IPR003591 -
Vifa1g03000 1060 SMART LRR_typ_2 105 129 IPR003591 -
Vifa1g03000 1060 SMART LRR_typ_2 394 417 IPR003591 -
Vifa1g03000 1060 Gene3D Phosphorylase Kinase; domain 1 739 854 - -
Vifa1g03000 1060 FunFam Tyrosine-sulfated glycopeptide receptor 1 343 681 - -
Vifa1g03000 1060 Pfam Protein kinase domain 780 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03000 1060 Gene3D Ribonuclease Inhibitor 152 224 IPR032675 -
Vifa1g03000 1060 CDD STKc_IRAK 785 1052 - -
Vifa1g03000 1060 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03000 Vifa-Chr1 471138633 471141815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03000 65 1056 Receptor kinase-like Gene Family AT1G55610 33.663 8.34e-158 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vifa1g03000 Pkinase 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03000 - - mtr:25487312 1784.23