Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02992 ATGAAGCTTCTTCATAAAAATATTTGCTTCTTTTTGTTTCTTTTTAGTTTAATTTCAAGTTCACGAGGCTATACATTTTATGCTGGTGGAAAAGATGGATGGGTTTTGAACCCTTCTGAAAGTTACAATCAATGGACAGGGAGGAATAGATTTCAAGTCAATGATATTCTTGTTTTTAAGTACAAGAAGGAGTCAAACTCAGTGTTGGTGGTGAACAAAGAGGATTATGATAAGTGCAACAAGGAGAATCCAATCAAGAAATTTGAAGATGGTGATTCTGAGTTTCAGTTTGATAGATCTGGTCCTTTTTATTTCATTAGTGGACATGATCATAATTGTGAAAATGGTCAAAAGTTAATTGTTGTGGTCTTGGCTGTAAGAGAACCTCCTCCTTATGTGGCTGCACCTCCTCCTAAGCTTCTTCCTACACCTCCTTATGTTTCAATTACACCTCCAAAGACACCTTCTCCTGTTTATAGTCCTCCAAAAAGTACTCCCTCACCGGGAAATCAACCTCCCTATGTTCCAATTACACCTCCAAAAGCACCCTCCCCGGGAAATGAACCACCCTATGTACCAATCACACCTCCAAAAGCACCTTCTCCTGTTTACAATCCGCCTAATATTCCTTATACTCCTCCTAAAGTACCTTCCCCGGGAAATGAACCACCCTATATACCAATCACACCTCCAAAAACACCTTCTCCCGTTTACAATCCGCCTAATATTCCTTATACTCCTCCTAAAACACCTTCCCCAGGAAATGAACCACCATATGTACCAATCACACCTCCAAAAACACCTTCTCCCATTTACAATCCACCTAATGTTCCTTATACTCCTCCTAAAGCACCTTCCCCAGAAAATAAACCACCCTATGTACCAATCACGCCTCCAAAAGCTCCTTCTCCTATTCACACTCCTCCTAGTATTCCTTATACTCCTCCAAAAGCCCCATCGCCGAAAAATGAACCACCATATATACCAATTACACCTCCTAAAACTCCTTCTCCAATTCACACTCCTCCTAATATTCCATATTCTCCTCCAAAAACACCTTCTCCTATTCACTCCCCTCCTAATGTTCCATATACTCCTCCAAAATCACCTTCACCTGGAAATGAACCACCCTATACACCAATTACACCTCCAAAAACGCCTTCTCCCACTCACTCCCCTCCAAATGTTCCATATACTCCTCCAAAATCACCTTCTCCTATTCACACCCCTTCTATTGCTCCATATACTCCTCCAAAAGCACCTTCCCCTGAAAATCAACCACCCTATGTACCAATTACACCACCAAACACTCCTTCTCCCATTCACACTCCTCCAAATCATCCCCACACTCCTCCAAAAGCTCCTTCTCCTAGCAACCACCCACCTTATGTTCCAACAACACCACCAAAAACTCCTTCTCCTACTTACCATCCTATTCCTCCTAGTACAGTTCCATTCACTCCTCCAAAATCTCCTTCCCCTATAACTGAACCACCATATACACCAAATCCTCCTAAAACCCCTTCTCCTATCTCTCAACCACCATATGTACCAATTACACCACCAAAATCACCTTCTCCTAATGTTCCTTACACACCTCCAACAACTCCTTCTCCTAGCAACCACCCTCCAAAATACCCTTCTCCAATTTCTCAACCTCCATATGTTCCAACACCTCCAAACACTCCTTCTCCAACATCATCACAAGCACCTTATATTCAGACACCTCCAAACACTCCTTCTCCAACATCACAACCACCGTACATTCAAACACCACCAAACACTTCTTCACCAAGATCACAACCACCATACGTTCAAACACCTCCAAACTCTCCTTCTTCGCCAACATCACAACCACCATACATTTCAGCCCCTCCAAAAGCTACTCCATCTCCATCTTCTCAAACACCTCCAGGTGCTCATTCACCAATTTCACAACCTCCATTTATTCAAACACCACCAAACTCTCATTCACCGACATCTCAACCACCTTACATTCAAACTCCACCAACCACCTCTTCTCCATCATCTTCTCAATCACCCCTTCTTCCAACTCCTCCAAAATCCTCTCAGCCTCCATCGATAGCAGAAACACCCTATGGAAATGGAATAGCACCATCTCCACTATCTCCATACCCTTCAAACAACTCACCATCACCATCAGTTTCACCTCTCGCAAGTTCACCAGTACCAACCCCTACTTCACCACCGGCTCCCACTCCAGCAAGCTCGCCGATATCAACCACTACTTCACCACCTGCTCCAACTCCGATAGGTTCCCCGGTATCAACCACTACTCCAACAGCATCTCCTGCAGGGTCCGTTCCGGCAGCAACAACTCCTTCACCTTCATCCACTTCCCCTGGAACACGAGGAACACCGTCATCTACCATCACAGGAAGTCCATCACCGACATCATCGAATGAAACAGCGCCAGGGAAGTCAAACGGAGTGTCGCATGCAAGTCCGTCAGGGACATGGGCATACTCCATTACAATTTTGGTCGGTGCTGCACTCACAAGTACTATTCTTGGATAG 2538 0.4441 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 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02992 845 MobiDBLite consensus disorder prediction 761 824 - -
Vifa1g02992 845 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055
Vifa1g02992 845 PANTHER BLUE COPPER PROTEIN 25 167 IPR039391 GO:0009055
Vifa1g02992 845 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Vifa1g02992 845 MobiDBLite consensus disorder prediction 575 670 - -
Vifa1g02992 845 MobiDBLite consensus disorder prediction 711 760 - -
Vifa1g02992 845 CDD OsENODL1_like 24 124 IPR041846 -
Vifa1g02992 845 MobiDBLite consensus disorder prediction 211 824 - -
Vifa1g02992 845 MobiDBLite consensus disorder prediction 211 566 - -
Vifa1g02992 845 FunFam Early nodulin-like protein 1 23 128 - -
Vifa1g02992 845 Pfam Plastocyanin-like domain 34 117 IPR003245 GO:0009055
Vifa1g02992 845 MobiDBLite consensus disorder prediction 143 198 - -
Vifa1g02992 845 Gene3D - 24 127 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02992 Vifa-Chr1 468810323 468813419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02992 1 181 Phytocyanin Superfamily AT5G53870 49.198 2.33e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02992 - - psat:127086316 544.658